Human Gene CAB39 (ENST00000258418.10) from GENCODE V44
  Description: Homo sapiens calcium binding protein 39 (CAB39), transcript variant 1, mRNA. (from RefSeq NM_016289)
Gencode Transcript: ENST00000258418.10
Gencode Gene: ENSG00000135932.12
Transcript (Including UTRs)
   Position: hg38 chr2:230,712,842-230,821,075 Size: 108,234 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg38 chr2:230,760,002-230,818,704 Size: 58,703 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:230,712,842-230,821,075)mRNA (may differ from genome)Protein (341 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMGIneXtProtOMIM
PubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CAB39_HUMAN
DESCRIPTION: RecName: Full=Calcium-binding protein 39; AltName: Full=MO25alpha; AltName: Full=Protein Mo25;
FUNCTION: Component of a complex that binds and activates STK11/LKB1. In the complex, required to stabilize the interaction between CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta) and STK11/LKB1.
SUBUNIT: Component of a trimeric complex composed of STK11/LKB1, STRAD (STRADA or STRADB) and CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta): the complex tethers STK11/LKB1 in the cytoplasm and stimulates its catalytic activity.
INTERACTION: Q15831:STK11; NbExp=4; IntAct=EBI-306905, EBI-306838; Q9C0K7:STRADB; NbExp=5; IntAct=EBI-306905, EBI-306893;
SUBCELLULAR LOCATION: Cytoplasm (Potential).
SIMILARITY: Belongs to the Mo25 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 35.32 RPKM in Muscle - Skeletal
Total median expression: 1026.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -221.70432-0.513 Picture PostScript Text
3' UTR -600.702371-0.253 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR013878 - Mo25

Pfam Domains:
PF08569 - Mo25-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1UPK - X-ray MuPIT 1UPL - X-ray MuPIT 2WTK - X-ray MuPIT 3GNI - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9Y376
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0019900 kinase binding
GO:0030295 protein kinase activator activity
GO:0043539 protein serine/threonine kinase activator activity

Biological Process:
GO:0007050 cell cycle arrest
GO:0010800 positive regulation of peptidyl-threonine phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0023014 signal transduction by protein phosphorylation
GO:0032147 activation of protein kinase activity
GO:0035556 intracellular signal transduction
GO:0043312 neutrophil degranulation
GO:0051291 protein heterooligomerization
GO:0071476 cellular hypotonic response
GO:0071902 positive regulation of protein serine/threonine kinase activity
GO:1901017 negative regulation of potassium ion transmembrane transporter activity
GO:1901380 negative regulation of potassium ion transmembrane transport

Cellular Component:
GO:0005576 extracellular region
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0032991 macromolecular complex
GO:0034774 secretory granule lumen
GO:0070062 extracellular exosome
GO:1902554 serine/threonine protein kinase complex
GO:1904813 ficolin-1-rich granule lumen


-  Descriptions from all associated GenBank mRNAs
  LF205276 - JP 2014500723-A/12779: Polycomb-Associated Non-Coding RNAs.
MA440853 - JP 2018138019-A/12779: Polycomb-Associated Non-Coding RNAs.
BC020570 - Homo sapiens calcium binding protein 39, mRNA (cDNA clone MGC:21631 IMAGE:4397573), complete cds.
AK292382 - Homo sapiens cDNA FLJ78295 complete cds, highly similar to Homo sapiens calcium binding protein 39 (CAB39), mRNA.
AK315692 - Homo sapiens cDNA, FLJ96790, Homo sapiens MO25 protein (MO25), mRNA.
AF113536 - Homo sapiens MO25 protein mRNA, complete cds.
AB590659 - Synthetic construct DNA, clone: pFN21AE1825, Homo sapiens CAB39 gene for calcium binding protein 39, without stop codon, in Flexi system.
KJ893978 - Synthetic construct Homo sapiens clone ccsbBroadEn_03372 CAB39 gene, encodes complete protein.
AF134480 - Homo sapiens MO25-like protein mRNA, complete cds.
AF151824 - Homo sapiens CGI-66 protein mRNA, complete cds.
AK000804 - Homo sapiens cDNA FLJ20797 fis, clone COL00256, highly similar to AF151824 Homo sapiens CGI-66 protein mRNA.
AK026335 - Homo sapiens cDNA: FLJ22682 fis, clone HSI10722.
AB073893 - Homo sapiens primary neuroblastoma cDNA, clone:Nbla03113, full insert sequence.
JD104269 - Sequence 85293 from Patent EP1572962.
JD462434 - Sequence 443458 from Patent EP1572962.
JD129420 - Sequence 110444 from Patent EP1572962.
JD484715 - Sequence 465739 from Patent EP1572962.
JD520224 - Sequence 501248 from Patent EP1572962.
JD126092 - Sequence 107116 from Patent EP1572962.
JD225089 - Sequence 206113 from Patent EP1572962.
JD451111 - Sequence 432135 from Patent EP1572962.
LF318828 - JP 2014500723-A/126331: Polycomb-Associated Non-Coding RNAs.
MA554405 - JP 2018138019-A/126331: Polycomb-Associated Non-Coding RNAs.
LF318831 - JP 2014500723-A/126334: Polycomb-Associated Non-Coding RNAs.
MA554408 - JP 2018138019-A/126334: Polycomb-Associated Non-Coding RNAs.
JD467851 - Sequence 448875 from Patent EP1572962.
JD429712 - Sequence 410736 from Patent EP1572962.
JD301286 - Sequence 282310 from Patent EP1572962.
JD566573 - Sequence 547597 from Patent EP1572962.
JD465667 - Sequence 446691 from Patent EP1572962.
JD553929 - Sequence 534953 from Patent EP1572962.
LF318832 - JP 2014500723-A/126335: Polycomb-Associated Non-Coding RNAs.
MA554409 - JP 2018138019-A/126335: Polycomb-Associated Non-Coding RNAs.
JD377224 - Sequence 358248 from Patent EP1572962.
JD087313 - Sequence 68337 from Patent EP1572962.
JD065401 - Sequence 46425 from Patent EP1572962.
LF318833 - JP 2014500723-A/126336: Polycomb-Associated Non-Coding RNAs.
MA554410 - JP 2018138019-A/126336: Polycomb-Associated Non-Coding RNAs.
JD021270 - Sequence 2294 from Patent EP1572962.
LF318834 - JP 2014500723-A/126337: Polycomb-Associated Non-Coding RNAs.
MA554411 - JP 2018138019-A/126337: Polycomb-Associated Non-Coding RNAs.
JD327412 - Sequence 308436 from Patent EP1572962.
JD028269 - Sequence 9293 from Patent EP1572962.
JD345452 - Sequence 326476 from Patent EP1572962.
JD323577 - Sequence 304601 from Patent EP1572962.
JD032280 - Sequence 13304 from Patent EP1572962.
JD304514 - Sequence 285538 from Patent EP1572962.
JD237166 - Sequence 218190 from Patent EP1572962.
JD423087 - Sequence 404111 from Patent EP1572962.
JD470873 - Sequence 451897 from Patent EP1572962.
JD515711 - Sequence 496735 from Patent EP1572962.
LF318835 - JP 2014500723-A/126338: Polycomb-Associated Non-Coding RNAs.
MA554412 - JP 2018138019-A/126338: Polycomb-Associated Non-Coding RNAs.
JD553555 - Sequence 534579 from Patent EP1572962.
JD460138 - Sequence 441162 from Patent EP1572962.
JD039646 - Sequence 20670 from Patent EP1572962.
JD504060 - Sequence 485084 from Patent EP1572962.
JD353380 - Sequence 334404 from Patent EP1572962.
LF318836 - JP 2014500723-A/126339: Polycomb-Associated Non-Coding RNAs.
MA554413 - JP 2018138019-A/126339: Polycomb-Associated Non-Coding RNAs.
JD231988 - Sequence 213012 from Patent EP1572962.
JD280828 - Sequence 261852 from Patent EP1572962.
JD037210 - Sequence 18234 from Patent EP1572962.
JD113664 - Sequence 94688 from Patent EP1572962.
JD352235 - Sequence 333259 from Patent EP1572962.
LF318837 - JP 2014500723-A/126340: Polycomb-Associated Non-Coding RNAs.
MA554414 - JP 2018138019-A/126340: Polycomb-Associated Non-Coding RNAs.
JD496392 - Sequence 477416 from Patent EP1572962.
JD285638 - Sequence 266662 from Patent EP1572962.
JD556498 - Sequence 537522 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04150 - mTOR signaling pathway

Reactome (by CSHL, EBI, and GO)

Protein Q9Y376 (Reactome details) participates in the following event(s):

R-HSA-380942 LKB1 forms a trimeric complex with STRAD and MO25
R-HSA-6800434 Exocytosis of ficolin-rich granule lumen proteins
R-HSA-6798748 Exocytosis of secretory granule lumen proteins
R-HSA-200421 Activation of cytosolic AMPK by phosphorylation
R-HSA-380972 Energy dependent regulation of mTOR by LKB1-AMPK
R-HSA-6798695 Neutrophil degranulation
R-HSA-165159 mTOR signalling
R-HSA-168249 Innate Immune System
R-HSA-162582 Signal Transduction
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: CAB39_HUMAN, CGI-66, ENST00000258418.1, ENST00000258418.2, ENST00000258418.3, ENST00000258418.4, ENST00000258418.5, ENST00000258418.6, ENST00000258418.7, ENST00000258418.8, ENST00000258418.9, MO25, NM_016289, Q9Y376, uc002vqx.1, uc002vqx.2, uc002vqx.3, uc002vqx.4, uc002vqx.5
UCSC ID: ENST00000258418.10
RefSeq Accession: NM_016289
Protein: Q9Y376 (aka CAB39_HUMAN or CB39_HUMAN)
CCDS: CCDS2478.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.