Human Gene ADHFE1 (ENST00000396623.8) from GENCODE V44
  Description: Homo sapiens alcohol dehydrogenase iron containing 1 (ADHFE1), mRNA; nuclear gene for mitochondrial product. (from RefSeq NM_144650)
RefSeq Summary (NM_144650): The ADHFE1 gene encodes hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24), which is responsible for the oxidation of 4-hydroxybutyrate in mammalian tissues (Kardon et al., 2006 [PubMed 16616524]).[supplied by OMIM, Mar 2008].
Gencode Transcript: ENST00000396623.8
Gencode Gene: ENSG00000147576.17
Transcript (Including UTRs)
   Position: hg38 chr8:66,432,504-66,468,907 Size: 36,404 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg38 chr8:66,432,517-66,468,352 Size: 35,836 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:66,432,504-66,468,907)mRNA (may differ from genome)Protein (467 aa)
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OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HOT_HUMAN
DESCRIPTION: RecName: Full=Hydroxyacid-oxoacid transhydrogenase, mitochondrial; Short=HOT; EC=1.1.99.24; AltName: Full=Alcohol dehydrogenase iron-containing protein 1; Short=ADHFe1; AltName: Full=Fe-containing alcohol dehydrogenase; Flags: Precursor;
FUNCTION: Catalyzes the cofactor-independent reversible oxidation of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA) coupled to reduction of 2-ketoglutarate (2-KG) to D-2- hydroxyglutarate (D-2-HG). D,L-3-hydroxyisobutyrate and L-3- hydroxybutyrate (L-3-OHB) are also substrates for HOT with 10-fold lower activities.
CATALYTIC ACTIVITY: (S)-3-hydroxybutanoate + 2-oxoglutarate = acetoacetate + (R)-2-hydroxyglutarate.
CATALYTIC ACTIVITY: 4-hydroxybutanoate + 2-oxoglutarate = succinic semialdehyde + (R)-2-hydroxyglutarate.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=0.17 mM for GHB; KM=1.2 mM for 2-KG; KM=0.12 mM for D-2-HG; KM=0.04 mM for SSA; KM=0.8 mM for L-3-OHB; Vmax=16 nmol/h/mg enzyme with GHB and 2-KG as substrates; Vmax=0.5 nmol/h/mg enzyme with SSA and D-2-HG as substrates; Vmax=1.8 nmol/h/mg enzyme with L-3-OHB and 2-KG as substrates; pH dependence: Optimum pH is 7.5;
SUBCELLULAR LOCATION: Mitochondrion (By similarity).
TISSUE SPECIFICITY: Only expressed in adult liver.
SIMILARITY: Belongs to the iron-containing alcohol dehydrogenase family. Hydroxyacid-oxoacid transhydrogenase subfamily.

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: ADHFE1
Diseases sorted by gene-association score: d-2-hydroxyglutaric aciduria (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 27.47 RPKM in Liver
Total median expression: 526.66 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -122.60555-0.221 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001670 - ADH_Fe

Pfam Domains:
PF00465 - Iron-containing alcohol dehydrogenase

ModBase Predicted Comparative 3D Structure on Q8IWW8
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details     
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Protein SequenceProtein SequenceProtein SequenceProtein Sequence  
AlignmentAlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004022 alcohol dehydrogenase (NAD) activity
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0047988 hydroxyacid-oxoacid transhydrogenase activity

Biological Process:
GO:0006103 2-oxoglutarate metabolic process
GO:0006539 glutamate catabolic process via 2-oxoglutarate
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AY033237 - Homo sapiens alcohol dehydrogenase 8 mRNA, complete cds.
AK056992 - Homo sapiens cDNA FLJ32430 fis, clone SKMUS2001129, weakly similar to NAD-DEPENDENT METHANOL DEHYDROGENASE (EC 1.1.1.244).
AK300881 - Homo sapiens cDNA FLJ53664 complete cds, highly similar to Rattus norvegicus alcohol dehydrogenase, iron containing, 1 (Adhfe1), mRNA.
BC047492 - Homo sapiens alcohol dehydrogenase, iron containing, 1, mRNA (cDNA clone IMAGE:5313123), containing frame-shift errors.
BC064634 - Homo sapiens alcohol dehydrogenase, iron containing, 1, mRNA (cDNA clone MGC:70541 IMAGE:5748980), complete cds.
AK300243 - Homo sapiens cDNA FLJ55174 complete cds, highly similar to Rattus norvegicus alcohol dehydrogenase, iron containing, 1 (Adhfe1), mRNA.
AK293530 - Homo sapiens cDNA FLJ59475 complete cds, highly similar to Homo sapiens alcohol dehydrogenase, iron containing, 1 (ADHFE1), mRNA.
AK294114 - Homo sapiens cDNA FLJ59864 complete cds, highly similar to Rattus norvegicus alcohol dehydrogenase, iron containing, 1 (Adhfe1), mRNA.
BC110290 - Homo sapiens alcohol dehydrogenase, iron containing, 1, mRNA (cDNA clone IMAGE:5186458), with apparent retained intron.
JD422348 - Sequence 403372 from Patent EP1572962.
JD125977 - Sequence 107001 from Patent EP1572962.
AB075879 - Homo sapiens mRNA for putative protein product of HMFT2263, partial cds.
JD295534 - Sequence 276558 from Patent EP1572962.
JD280827 - Sequence 261851 from Patent EP1572962.
JD566202 - Sequence 547226 from Patent EP1572962.
JD251295 - Sequence 232319 from Patent EP1572962.
JD469725 - Sequence 450749 from Patent EP1572962.
JD515982 - Sequence 497006 from Patent EP1572962.
JD097233 - Sequence 78257 from Patent EP1572962.
JD062986 - Sequence 44010 from Patent EP1572962.
JD313525 - Sequence 294549 from Patent EP1572962.
JD353476 - Sequence 334500 from Patent EP1572962.
JD316623 - Sequence 297647 from Patent EP1572962.
JD044623 - Sequence 25647 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8IWW8 (Reactome details) participates in the following event(s):

R-HSA-880002 (R)-2-hydroxyglutarate + succinate semialdehyde <=> 2-oxoglutarate + 4-hydroxybutyrate
R-HSA-880033 2-oxoglutarate + 4-hydroxybutyrate <=> (R)-2-hydroxyglutarate + succinate semialdehyde
R-HSA-880009 Interconversion of 2-oxoglutarate and 2-hydroxyglutarate
R-HSA-71406 Pyruvate metabolism and Citric Acid (TCA) cycle
R-HSA-1428517 The citric acid (TCA) cycle and respiratory electron transport
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B4DTJ8, ENST00000396623.1, ENST00000396623.2, ENST00000396623.3, ENST00000396623.4, ENST00000396623.5, ENST00000396623.6, ENST00000396623.7, HMFT2263, HOT_HUMAN, NM_144650, Q49A19, Q68CI7, Q6P2B6, Q8IWW8, Q96MF9, uc003xwb.1, uc003xwb.2, uc003xwb.3, uc003xwb.4, uc003xwb.5, uc003xwb.6
UCSC ID: ENST00000396623.8
RefSeq Accession: NM_144650
Protein: Q8IWW8 (aka HOT_HUMAN)
CCDS: CCDS6190.2

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.