Human Gene ENAM (ENST00000396073.4) from GENCODE V44
  Description: Homo sapiens enamelin (ENAM), transcript variant 1, mRNA. (from RefSeq NM_031889)
RefSeq Summary (NM_031889): Dental enamel forms the outer cap of teeth and is the hardest substance found in vertebrates. This gene encodes the largest protein in the enamel matrix of developing teeth. The protein is involved in the mineralization and structural organization of enamel. Defects in this gene result in amelogenesis imperfect type 1C.[provided by RefSeq, Oct 2009].
Gencode Transcript: ENST00000396073.4
Gencode Gene: ENSG00000132464.13
Transcript (Including UTRs)
   Position: hg38 chr4:70,628,744-70,646,824 Size: 18,081 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg38 chr4:70,629,501-70,644,855 Size: 15,355 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:70,628,744-70,646,824)mRNA (may differ from genome)Protein (1142 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ENAM_HUMAN
DESCRIPTION: RecName: Full=Enamelin; Flags: Precursor;
FUNCTION: Involved in the mineralization and structural organization of enamel. Involved in the extension of enamel during the secretory stage of dental enamel formation.
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix.
TISSUE SPECIFICITY: Expressed in tooth particularly in odontoblast, ameloblast and cementoblast.
DISEASE: Defects in ENAM are the cause of amelogenesis imperfecta type 1B (AI1B) [MIM:104500]. AI1B is an autosomal dominant defect of enamel formation. Clinical manifestations may be variable. Some cases present with generalized enamel hypoplasia resulting in small, smooth, yellow and spaced teeth (smooth hypoplastic AI). Others show horizontal rows of pits, grooves or a hypoplastic area in the enamel (local hypoplastic AI).
DISEASE: Defects in ENAM are the cause of amelogenesis imperfecta type 1C (AI1C) [MIM:204650]; also known as amelogenesis imperfecta hypoplastic with or without openbite malocclusion. AI1C is an autosomal recessive defect of dental enamel formation. Teeth show hypoplastic and unmineralized enamel, and a yellow-brown discoloration. Enamel defects can be associated with facial and oral features including vertical dysgnathia and anterior openbite malocclusion.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ENAM
Diseases sorted by gene-association score: amelogenesis imperfecta, type ib* (1317), amelogenesis imperfecta, type ic* (900), hypoplastic amelogenesis imperfecta* (213), amelogenesis imperfecta (42), teeth hard tissue disease (13), dental pulp calcification (11), amelogenesis imperfecta, type iiia (9), hypocalcified amelogenesis imperfecta (9), hypercementosis (8), dental caries (8), brachyolmia (6), mouth disease (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.26 RPKM in Kidney - Cortex
Total median expression: 5.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -49.90281-0.178 Picture PostScript Text
3' UTR -414.501969-0.211 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015673 - Enamelin

ModBase Predicted Comparative 3D Structure on Q9NRM1
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0030345 structural constituent of tooth enamel

Biological Process:
GO:0022604 regulation of cell morphogenesis
GO:0031214 biomineral tissue development
GO:0036305 ameloblast differentiation
GO:0042475 odontogenesis of dentin-containing tooth
GO:0043687 post-translational protein modification
GO:0044267 cellular protein metabolic process
GO:0070175 positive regulation of enamel mineralization
GO:0097186 amelogenesis

Cellular Component:
GO:0005576 extracellular region
GO:0005788 endoplasmic reticulum lumen


-  Descriptions from all associated GenBank mRNAs
  AF125373 - Homo sapiens enamelin mRNA, complete cds.
JD352755 - Sequence 333779 from Patent EP1572962.
BC117308 - Homo sapiens enamelin, mRNA (cDNA clone MGC:150917 IMAGE:40125859), complete cds.
BC117310 - Homo sapiens enamelin, mRNA (cDNA clone MGC:150919 IMAGE:40125861), complete cds.
BC171756 - Homo sapiens cDNA clone IMAGE:9053257, containing frame-shift errors.
BC111841 - Synthetic construct Homo sapiens clone IMAGE:40080851, MGC:133405 ENAM protein (ENAM) mRNA, encodes complete protein.
AF210247 - Homo sapiens enamelin (ENAM) mRNA, partial cds.
JD201561 - Sequence 182585 from Patent EP1572962.
JD566736 - Sequence 547760 from Patent EP1572962.
JD557073 - Sequence 538097 from Patent EP1572962.
JD167178 - Sequence 148202 from Patent EP1572962.
JD410933 - Sequence 391957 from Patent EP1572962.
JD524013 - Sequence 505037 from Patent EP1572962.
JD090024 - Sequence 71048 from Patent EP1572962.
JD206578 - Sequence 187602 from Patent EP1572962.
JD069526 - Sequence 50550 from Patent EP1572962.
JD061113 - Sequence 42137 from Patent EP1572962.
JD045424 - Sequence 26448 from Patent EP1572962.
JD501811 - Sequence 482835 from Patent EP1572962.
JD359029 - Sequence 340053 from Patent EP1572962.
JD050163 - Sequence 31187 from Patent EP1572962.
JD170797 - Sequence 151821 from Patent EP1572962.
JD154704 - Sequence 135728 from Patent EP1572962.
JD199041 - Sequence 180065 from Patent EP1572962.
JD086785 - Sequence 67809 from Patent EP1572962.
JD314904 - Sequence 295928 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NRM1 (Reactome details) participates in the following event(s):

R-HSA-8952289 FAM20C phosphorylates FAM20C substrates
R-HSA-381426 Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
R-HSA-8957275 Post-translational protein phosphorylation
R-HSA-392499 Metabolism of proteins
R-HSA-597592 Post-translational protein modification

-  Other Names for This Gene
  Alternate Gene Symbols: ENAM_HUMAN, ENST00000396073.1, ENST00000396073.2, ENST00000396073.3, NM_031889, Q17RI5, Q9H3D1, Q9NRM1, uc011caw.1, uc011caw.2, uc011caw.3
UCSC ID: ENST00000396073.4
RefSeq Accession: NM_031889
Protein: Q9NRM1 (aka ENAM_HUMAN)
CCDS: CCDS3544.2

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.