Mouse Gene Prkg2 (ENSMUST00000161490.8) from GENCODE VM33
  Description: Mus musculus protein kinase, cGMP-dependent, type II (Prkg2), mRNA. (from RefSeq NM_008926)
Gencode Transcript: ENSMUST00000161490.8
Gencode Gene: ENSMUSG00000029334.15
Transcript (Including UTRs)
   Position: mm39 chr5:99,077,632-99,185,210 Size: 107,579 Total Exon Count: 19 Strand: -
Coding Region
   Position: mm39 chr5:99,079,869-99,172,713 Size: 92,845 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Methods
Data last updated at UCSC: 2023-08-15 19:06:27

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:99,077,632-99,185,210)mRNA (may differ from genome)Protein (762 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: Q8CAH8_MOUSE
DESCRIPTION: RecName: Full=cGMP-dependent protein kinase; EC=2.7.11.12;
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. cGMP subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C548651 2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • C055656 8-((4-chlorophenyl)thio)cyclic-3',5'-GMP
  • C090860 8-(4-chlorophenylthio)guanosine 3',5'-cyclic monophosphorothioate
  • D000643 Ammonium Chloride
  • D019256 Cadmium Chloride
  • D002994 Clofibrate
  • D060729 Coal Ash
  • D003300 Copper
  • D004997 Ethinyl Estradiol
          more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -226.70442-0.513 Picture PostScript Text
3' UTR -565.402237-0.253 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR016232 - cGMP-dependent_protein_kinase
IPR002374 - cGMP_dep_kinase
IPR018490 - cNMP-bd-like
IPR018488 - cNMP-bd_CS
IPR000595 - cNMP-bd_dom
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR014710 - RmlC-like_jellyroll
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00027 - Cyclic nucleotide-binding domain
PF00069 - Protein kinase domain

ModBase Predicted Comparative 3D Structure on Q8CAH8
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004692 cGMP-dependent protein kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0030553 cGMP binding
GO:0042803 protein homodimerization activity

Biological Process:
GO:0006468 protein phosphorylation
GO:0016310 phosphorylation
GO:0036289 peptidyl-serine autophosphorylation
GO:0072659 protein localization to plasma membrane
GO:2001226 negative regulation of chloride transport

Cellular Component:
GO:0016020 membrane
GO:0031965 nuclear membrane


-  Descriptions from all associated GenBank mRNAs
  AK165904 - Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730017I02 product:protein kinase, cGMP-dependent, type II, full insert sequence.
AK038739 - Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230058O08 product:protein kinase, cGMP-dependent, type II, full insert sequence.
AK081422 - Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130016C24 product:protein kinase, cGMP-dependent, type II, full insert sequence.
BC113205 - Mus musculus protein kinase, cGMP-dependent, type II, mRNA (cDNA clone MGC:130517 IMAGE:40047751), complete cds.
L12460 - Mouse cyclic GMP-dependent protein kinase II mRNA, complete cds and flanking regions.
AK144598 - Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730007I04 product:unclassifiable, full insert sequence.
AK164950 - Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030047N08 product:protein kinase, cGMP-dependent, type II, full insert sequence.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8CAH8 (Reactome details) participates in the following event(s):

R-MMU-1475422 PTPS is phosphorylated by cGMP-dependant protein kinase II
R-MMU-1497853 Sepiapterin reductase (SPR) is phosphorylated by Ca2+/calmodulin-dependent protein kinase II
R-MMU-418442 PKG1 phosphorylates IRAG:IP3R1 inhibiting IP3-stimulated Ca2+ release
R-MMU-1474151 Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation
R-MMU-418457 cGMP effects
R-MMU-8978934 Metabolism of cofactors
R-MMU-392154 Nitric oxide stimulates guanylate cyclase
R-MMU-196854 Metabolism of vitamins and cofactors
R-MMU-418346 Platelet homeostasis
R-MMU-1430728 Metabolism
R-MMU-109582 Hemostasis

-  Other Names for This Gene
  Alternate Gene Symbols: ENSMUST00000161490.1, ENSMUST00000161490.2, ENSMUST00000161490.3, ENSMUST00000161490.4, ENSMUST00000161490.5, ENSMUST00000161490.6, ENSMUST00000161490.7, NM_008926, Q8CAH8, Q8CAH8_MOUSE, uc008ygj.1, uc008ygj.2, uc008ygj.3, uc008ygj.4
UCSC ID: ENSMUST00000161490.8
RefSeq Accession: NM_008926
Protein: Q8CAH8

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.