Gene interactions and pathways from curated databases and text-mining
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<type 'exceptions.AssertionError'>
Python 2.7.5: /usr/bin/python2
Fri Sep 24 03:03:44 2021

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /data/apache/cgi-bin/hgGeneGraph in ()
   2034     htmlMiddle()
   2035     jsInlineFinish()
   2036     htmlPageEnd()
   2037 
=> 2038 main()
main = <function main>
 /data/apache/cgi-bin/hgGeneGraph in main()
   2032     htmlHeader()
   2033     printInlineAndStyles()
=> 2034     htmlMiddle()
   2035     jsInlineFinish()
   2036     htmlPageEnd()
global htmlMiddle = <function htmlMiddle>
 /data/apache/cgi-bin/hgGeneGraph in htmlMiddle()
   2009         exit(0)
   2010 
=> 2011     showGraphBrowser()
   2012 
   2013 def main():
global showGraphBrowser = <function showGraphBrowser>
 /data/apache/cgi-bin/hgGeneGraph in showGraphBrowser()
   1372     conn = sqlConnect(GGDB)
   1373 
=> 1374     graphLinks, lowLinks = buildGraph(conn, gene, geneCount, MINSUPP, addNeighbors)
   1375     weightedLinks, minAbsCount = flattenLink(graphLinks)
   1376 
graphLinks undefined, lowLinks undefined, global buildGraph = <function buildGraph>, conn = <_mysql.connection open to 'localhost' at 1405ce0>, gene = 'C7ORF25', geneCount = 25, global MINSUPP = 2, addNeighbors = True
 /data/apache/cgi-bin/hgGeneGraph in buildGraph(conn=<_mysql.connection open to 'localhost' at 1405ce0>, gene='C7ORF25', geneCount=25, minSupp=2, addNeighbors=True)
    546             # add the high links back to the graph
    547             for pair, linkData in otherLinks.iteritems():
=>  548                 assert(pair not in graphLinks)
    549                 graphLinks[pair] = linkData
    550 
pair = ('C7orf25', 'FRA10AC1'), graphLinks = defaultdict(<type 'set'>, {('C7orf25', 'RPL36AL'...', 'C7orf25'): (0, ['hprd'], ['ppi'], 3345, '')})

<type 'exceptions.AssertionError'>:
      args = ()
      message = ''