Gene interactions and pathways from curated databases and text-mining

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COL6A1 — ITGAV

Pathways - manually collected, often from reviews:

  • KEGG Focal adhesion: CHAD/COL11A1/COL11A2/COL1A1/COL1A2/COL2A1/COL3A1/COL4A1/COL4A2/COL4A4/COL4A5/COL4A6/COL5A1/COL5A2/COL5A3/COL6A1/COL6A2/COL6A3/COL6A6/COMP/FN1/IBSP/LAMA1/LAMA2/LAMA3/LAMA4/LAMA5/LAMB1/LAMB2/LAMB3/LAMB4/LAMC1/LAMC2/LAMC3/RELN/SPP1/THBS1/THBS2/THBS3/THBS4/TNC/TNN/TNR/TNXB/VTN/VWF → Complex of 21 proteins (protein-protein, activation)
  • KEGG ECM-receptor interaction: COL11A1/COL11A2/COL1A1/COL1A2/COL2A1/COL3A1/COL4A1/COL4A2/COL4A4/COL4A5/COL4A6/COL5A1/COL5A2/COL5A3/COL6A1/COL6A2/COL6A3/COL6A6 → Complex of ITGAV-ITGB8 (protein-protein, activation)
  • NCI Pathway Database Integrins in angiogenesis: Collagen (COL7A1/COL3A1/COL2A1/COL6A1/COL6A2/COL6A3/COL5A1/COL5A2/COL4A4_COL4A3_COL4A6_COL4A1_COL4A5/COL11A1/COL11A2/COL2A1/COL1A1/COL1A2) → alphav/beta3 Integrin complex (ITGAV-ITGB3) (modification, activates)
    Stupack et al., J Cell Biol 2001
    Evidence: mutant phenotype, assay, physical interaction
  • NCI Pathway Database Integrins in angiogenesis: Collagen (COL7A1/COL3A1/COL2A1/COL6A1/COL6A2/COL6A3/COL5A1/COL5A2/COL4A4_COL4A3_COL4A6_COL4A1_COL4A5/COL11A1/COL11A2/COL2A1/COL1A1/COL1A2) → alphav/beta3 Integrin/Caspase 8 complex (ITGAV) (modification, activates)
    Stupack et al., J Cell Biol 2001
    Evidence: mutant phenotype, assay, physical interaction