Schema for ARTIC Primers V3 - ARTIC V3 Oxford Nanopore sequencing primers
  Database: wuhCor1    Primary Table: artic Data last updated: 2020-04-22
Big Bed File: /gbdb/wuhCor1/bbi/artic.bb
Item Count: 218
Format description: Browser extensible data (4 fields) plus artic fields
fieldexampledescription
chromNC_045512v2Chromosome (or contig, scaffold, etc.)
chromStart19911Start position in chromosome
chromEnd19939End position in chromosome
namenCoV-2019_65_RIGHTName of item
score0Score from 0-1000
strand-+ or -
poolnCoV-2019_1Sequencing pool

Sample Rows
 
chromchromStartchromEndnamescorestrandpool
NC_045512v21991119939nCoV-2019_65_RIGHT0-nCoV-2019_1
NC_045512v22017220200nCoV-2019_67_LEFT0+nCoV-2019_1
NC_045512v22023120255nCoV-2019_66_RIGHT0-nCoV-2019_2
NC_045512v22047220496nCoV-2019_68_LEFT0+nCoV-2019_2
NC_045512v22054220572nCoV-2019_67_RIGHT0-nCoV-2019_1
NC_045512v22078620813nCoV-2019_69_LEFT0+nCoV-2019_1
NC_045512v22086720890nCoV-2019_68_RIGHT0-nCoV-2019_2
NC_045512v22107521104nCoV-2019_70_LEFT0+nCoV-2019_2
NC_045512v22114621169nCoV-2019_69_RIGHT0-nCoV-2019_1
NC_045512v22135721386nCoV-2019_71_LEFT0+nCoV-2019_1

ARTIC Primers V3 (artic) Track Description
 

Description

This track shows the primers for the ARTIC network SARS-CoV-2 sequencing protocol, Version 3.

Display Conventions and Configuration

Genomic locations of primers are highlighted. A click on them shows the primer pool.

Methods

Artic Network primer sequences were downloaded from the file Artic Github BED file and converted to bigBed.

Data Access

The raw data can be explored interactively with the Table Browser or combined with other datasets in the Data Integrator tool. For automated analysis, the genome annotation is stored in a bigBed file that can be downloaded from the download server.

Annotations can be converted from binary to ASCII text by our command-line tool bigBedToBed. Instructions for downloading this command can be found on our utilities page. The tool can also be used to obtain features within a given range without downloading the file, for example:

bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/wuhCor1/bbi/artic.bb -chrom=NC_045512v2 -start=0 -end=29902 stdout

Please refer to our mailing list archives for questions, or our Data Access FAQ for more information.