Schema for mrnaOrientInfo
  Database: dm6    Primary Table: mrnaOrientInfo    Row Count: 151,376   Data last updated: 2020-08-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
chromStart 157int(10) unsigned range Start position in chromosome
chromEnd 181int(10) unsigned range End position in chromosome
name AB293746varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        dm6.all_mrna.qName (via mrnaOrientInfo.name)
      dm6.refFlat.name (via mrnaOrientInfo.name)
      dm6.refGene.name (via mrnaOrientInfo.name)
      dm6.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr2L157181AB29374600000
585chr2L157182AB29661800000
585chr2L298322AB29671700000
585chr2L298323AB29370100000
585chr2L298324AB29363600000
585chr2L298325AB29380700000
585chr2L445470AB29641700000
585chr2L445471AB29381200000
585chr2L615639AB29374600000
585chr2L615640AB29661800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.