Ensembl Assembly Track Settings
 
Ensembl Gene Scaffold Assembly   (All Mapping and Sequencing tracks)

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Data last updated at UCSC: 2019-01-11

Description

This track shows the mapping of Ensembl gene scaffold coordinates onto the underlying assembly contigs or scaffolds. Items are displayed in black and gray. Gray items indicate segments of the gene scaffold that do not map in linear order to the underlying contig or scaffold.

These gene scaffolds were generated by Ensembl.

Methods

This track is created from the Ensembl MySQL tables: assembly.txt and seq_region.txt.

For a description of the methods used in Ensembl gene prediction, refer to Hubbard et al. (2002) in the References section below.

Credits

Thanks to Ensembl for providing this annotation.

References

Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T et al. The Ensembl genome database project. Nucleic Acids Res. 2002 Jan 1;30(1):38-41. PMID: 11752248; PMC: PMC99161