WSSD Coverage Track Settings
 
Regions Assayed for SDD   (All Mapping and Sequencing tracks)

Display mode:   
View table schema
Data last updated at UCSC: 2007-09-12

Description

This track represents coverage of clones that were assayed for segmental duplications using high-depth sequence reads from the Whole Genome Shotgun assembly of Platypus. Regions absent from this track were not assessed by this version of the Segmental Duplication Database (SDD). For a description of the whole-genome shotgun sequence detection (WSSD) method, see Bailey, et al., 2002, in the References section below.

Credits

The data were provided by Ginger Cheng and Evan Eichler.

References

Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE. Recent segmental duplications in the human genome. Science. 2002 Aug 9;297(5583):1003-7. PMID: 12169732

Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE. Segmental duplications: organization and impact within the current human genome project assembly. Genome Res. 2001 Jun;11(6):1005-17. PMID: 11381028; PMC: PMC311093

She X, Jiang Z, Clark RA, Liu G, Cheng Z, Tuzun E, Church DM, Sutton G, Halpern AL, Eichler EE. Shotgun sequence assembly and recent segmental duplications within the human genome. Nature. 2004 Oct 21;431(7011):927-30. PMID: 15496912