Experiments by Ontology Tracks
 
Experiments by Ontology tracks

Display mode:   

 All
adipose tissue  adipose tissue  
adrenal gland  adrenal gland  
blood  blood  
bone marrow  bone marrow  
brain  brain  
embryo  embryo  
endocrine gland  endocrine gland  
epithelium  epithelium  
exocrine gland  exocrine gland  
heart  heart  
immune organ  immune organ  
intestine  intestine  
kidney  kidney  
limb  limb  
liver  liver  
lung  lung  
musculature of body  musculature of body  
ovary  ovary  
pancreas  pancreas  
placenta  placenta  
small intestine  small intestine  
stomach  stomach  
testis  testis  
thymus  thymus  
unknown  unknown  
urinary bladder  urinary bladder  

Tissue ontology supertrack

This supertrack contains all available ENCODE data produced by CAGE, RAMPAGE, RNA-seq, and eCLIP-seq, grouped by tissue ontology information as provided by the ENCODE DCC via the ENCODE Portal.

This supertrack is a component of the ENCODE RNA mega-trackhub. The hub also includes individual supertracks for each of the assays mentioned above, if you are interested in viewing data for a single assay across multiple biosamples.

Acknowledgments

Thanks to the ENCODE Consortium, the ENCODE production laboratories, and the ENCODE Data Coordination Center for generating and processing the datasets used here. The ENCODE accession numbers of the constituent datasets are available from the peak details page. Henry Pratt, Jill Moore, Michael Purcaro, and Zhiping Weng, PI, at the ENCODE Data Analysis Center (ZLab at UMass Medical Center) developed this trackhub. Special thanks to Kate Rosenbloom and Jim Kent at UCSC for guidance developing this trackhub.

References

ENCODE Project Consortium, Jill E. Moore, Michael J. Purcaro, Henry E. Pratt, Charles B. Epstein, Noam Shoresh, Jessika Adrian, et al. 2020. "Expanded Encyclopaedias of DNA Elements in the Human and Mouse Genomes." Nature 583 (7818): 699–710.

Contact

Please contact henry.pratt@umassmed.edu with any questions or comments about this trackhub.