Assay Summary Tracks
 
Assay Summary tracks

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DNase-seq Summary  Roadmap Epigenome DNase-seq Summary  
H2AFZ Summary  Roadmap Epigenome H2AFZ Summary  
H2AK5ac Summary  Roadmap Epigenome H2AK5ac Summary  
H2AK9ac Summary  Roadmap Epigenome H2AK9ac Summary  
H2BK120ac Summary  Roadmap Epigenome H2BK120ac Summary  
H2BK12ac Summary  Roadmap Epigenome H2BK12ac Summary  
H2BK15ac Summary  Roadmap Epigenome H2BK15ac Summary  
H2BK20ac Summary  Roadmap Epigenome H2BK20ac Summary  
H2BK5ac Summary  Roadmap Epigenome H2BK5ac Summary  
H3K14ac Summary  Roadmap Epigenome H3K14ac Summary  
H3K18ac Summary  Roadmap Epigenome H3K18ac Summary  
H3K23ac Summary  Roadmap Epigenome H3K23ac Summary  
H3K23me2 Summary  Roadmap Epigenome H3K23me2 Summary  
H3K27ac Summary  Roadmap Epigenome H3K27ac Summary  
H3K27me3 Summary  Roadmap Epigenome H3K27me3 Summary  
H3K36me3 Summary  Roadmap Epigenome H3K36me3 Summary  
H3K4ac Summary  Roadmap Epigenome H3K4ac Summary  
H3K4me1 Summary  Roadmap Epigenome H3K4me1 Summary  
H3K4me2 Summary  Roadmap Epigenome H3K4me2 Summary  
H3K4me3 Summary  Roadmap Epigenome H3K4me3 Summary  
H3K56ac Summary  Roadmap Epigenome H3K56ac Summary  
H3K79me1 Summary  Roadmap Epigenome H3K79me1 Summary  
H3K79me2 Summary  Roadmap Epigenome H3K79me2 Summary  
H3K9ac Summary  Roadmap Epigenome H3K9ac Summary  
H3K9me1 Summary  Roadmap Epigenome H3K9me1 Summary  
H3K9me3 Summary  Roadmap Epigenome H3K9me3 Summary  
H3T11ph Summary  Roadmap Epigenome H3T11ph Summary  
H4K12ac Summary  Roadmap Epigenome H4K12ac Summary  
H4K20me1 Summary  Roadmap Epigenome H4K20me1 Summary  
H4K5ac Summary  Roadmap Epigenome H4K5ac Summary  
H4K8ac Summary  Roadmap Epigenome H4K8ac Summary  
H4K91ac Summary  Roadmap Epigenome H4K91ac Summary  
microRNA-seq Summary  Roadmap Epigenome microRNA-seq Summary  
polyA_plus_RNA-seq Summary  Roadmap Epigenome polyA_plus_RNA-seq Summary  
small_RNA-seq Summary  Roadmap Epigenome small_RNA-seq Summary  
total_RNA-seq Summary  Roadmap Epigenome total_RNA-seq Summary  
WGBS Summary  Roadmap Epigenome WGBS Summary  
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF