Tsankov 2014 Track Settings
 
Tsankov 2014 PSC Differentiation ChIP-SEQ

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 SRR1576253_PRDM1-Blimp1_mesendo_peaks  SRR1576253_PRDM1-Blimp1_mesendo_peaks   Data format 
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 SRR1576254_PRDM1-Blimp1_endo_peaks  SRR1576254_PRDM1-Blimp1_endo_peaks   Data format 
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 SRR1576255_PRDM1-Blimp1_h64_peaks  SRR1576255_PRDM1-Blimp1_h64_peaks   Data format 
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 SRR1576256_PRDM1-Blimp1_endo_peaks  SRR1576256_PRDM1-Blimp1_endo_peaks   Data format 
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 SRR1576257_Cdx2_meso_peaks  SRR1576257_Cdx2_meso_peaks   Data format 
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 SRR1576258_Ctcf_h64_peaks  SRR1576258_Ctcf_h64_peaks   Data format 
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 SRR1576259_Ctcf_h64_peaks  SRR1576259_Ctcf_h64_peaks   Data format 
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 SRR1576260_Ctcf_h64_peaks  SRR1576260_Ctcf_h64_peaks   Data format 
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 SRR1576261_Ctcf_meso_peaks  SRR1576261_Ctcf_meso_peaks   Data format 
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 SRR1576262_Ctcf_mesendo_peaks  SRR1576262_Ctcf_mesendo_peaks   Data format 
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 SRR1576263_Ctcf_endo_peaks  SRR1576263_Ctcf_endo_peaks   Data format 
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 SRR1576264_Ctcf_ecto_peaks  SRR1576264_Ctcf_ecto_peaks   Data format 
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 SRR1576265_Eomes_h64_peaks  SRR1576265_Eomes_h64_peaks   Data format 
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 SRR1576266_Eomes_endo_peaks  SRR1576266_Eomes_endo_peaks   Data format 
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 SRR1576267_Eomes_endo_peaks  SRR1576267_Eomes_endo_peaks   Data format 
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 SRR1576268_Eomes_mesendo_peaks  SRR1576268_Eomes_mesendo_peaks   Data format 
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 SRR1576269_Eomes_mesendo_peaks  SRR1576269_Eomes_mesendo_peaks   Data format 
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 SRR1576270_FoxA1_endo3d_peaks  SRR1576270_FoxA1_endo3d_peaks   Data format 
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 SRR1576271_FoxA1_h64_peaks  SRR1576271_FoxA1_h64_peaks   Data format 
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 SRR1576272_FoxA1_mesendo_peaks  SRR1576272_FoxA1_mesendo_peaks   Data format 
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 SRR1576273_FoxA1_endo_peaks  SRR1576273_FoxA1_endo_peaks   Data format 
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 SRR1576274_FoxA1_endo_peaks  SRR1576274_FoxA1_endo_peaks   Data format 
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 SRR1576275_FoxA2_endo3d_peaks  SRR1576275_FoxA2_endo3d_peaks   Data format 
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 SRR1576276_FoxA2_mesendo_peaks  SRR1576276_FoxA2_mesendo_peaks   Data format 
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 SRR1576277_FoxA2_endo_peaks  SRR1576277_FoxA2_endo_peaks   Data format 
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 SRR1576278_FoxA2_h64_peaks  SRR1576278_FoxA2_h64_peaks   Data format 
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 SRR1576279_FoxA2_rd_endo_peaks  SRR1576279_FoxA2_rd_endo_peaks   Data format 
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 SRR1576280_Gata4_h64_peaks  SRR1576280_Gata4_h64_peaks   Data format 
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 SRR1576281_Gata4_mesendo_peaks  SRR1576281_Gata4_mesendo_peaks   Data format 
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 SRR1576282_Gata4_meso_peaks  SRR1576282_Gata4_meso_peaks   Data format 
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 SRR1576283_Gata4_meso_peaks  SRR1576283_Gata4_meso_peaks   Data format 
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 SRR1576284_Gata4_endo_peaks  SRR1576284_Gata4_endo_peaks   Data format 
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 SRR1576285_Gata4_endoC1_peaks  SRR1576285_Gata4_endoC1_peaks   Data format 
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 SRR1576286_Gata4_endoD2_peaks  SRR1576286_Gata4_endoD2_peaks   Data format 
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 SRR1576287_Gata4_endoD22_peaks  SRR1576287_Gata4_endoD22_peaks   Data format 
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 SRR1576288_Gata4_endoD3_peaks  SRR1576288_Gata4_endoD3_peaks   Data format 
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 SRR1576289_Gata4_mesoC1_peaks  SRR1576289_Gata4_mesoC1_peaks   Data format 
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 SRR1576290_Gata4_mesoD2_peaks  SRR1576290_Gata4_mesoD2_peaks   Data format 
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 SRR1576291_Gata4_mesoD22_peaks  SRR1576291_Gata4_mesoD22_peaks   Data format 
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 SRR1576292_Gata4_mesoD3_peaks  SRR1576292_Gata4_mesoD3_peaks   Data format 
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 SRR1576293_Gata4_endo_peaks  SRR1576293_Gata4_endo_peaks   Data format 
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 SRR1576294_Gata4_sort_meso_peaks  SRR1576294_Gata4_sort_meso_peaks   Data format 
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 SRR1576295_Gata4_unsort_meso_peaks  SRR1576295_Gata4_unsort_meso_peaks   Data format 
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 SRR1576296_Gata6_endo3d_peaks  SRR1576296_Gata6_endo3d_peaks   Data format 
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 SRR1576297_Gata6_h64_peaks  SRR1576297_Gata6_h64_peaks   Data format 
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 SRR1576298_Gata6_endo_peaks  SRR1576298_Gata6_endo_peaks   Data format 
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 SRR1576299_Gata6_meso_peaks  SRR1576299_Gata6_meso_peaks   Data format 
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 SRR1576300_Gata6_mesendo_peaks  SRR1576300_Gata6_mesendo_peaks   Data format 
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 SRR1576301_Gata6_rd_meso_peaks  SRR1576301_Gata6_rd_meso_peaks   Data format 
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 SRR1576302_Gata6_rd_endo_peaks  SRR1576302_Gata6_rd_endo_peaks   Data format 
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 SRR1576303_H3K27ac_endoC1_peaks  SRR1576303_H3K27ac_endoC1_peaks   Data format 
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 SRR1576304_H3K27ac_endoD2_peaks  SRR1576304_H3K27ac_endoD2_peaks   Data format 
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 SRR1576305_H3K27ac_endoD22_peaks  SRR1576305_H3K27ac_endoD22_peaks   Data format 
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 SRR1576306_H3K27ac_endoD3_peaks  SRR1576306_H3K27ac_endoD3_peaks   Data format 
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 SRR1576307_H3K27ac_mesoC1_peaks  SRR1576307_H3K27ac_mesoC1_peaks   Data format 
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 SRR1576308_H3K27ac_mesoD2_peaks  SRR1576308_H3K27ac_mesoD2_peaks   Data format 
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 SRR1576309_H3K27ac_mesoD22_peaks  SRR1576309_H3K27ac_mesoD22_peaks   Data format 
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 SRR1576310_H3K27ac_mesoD3_peaks  SRR1576310_H3K27ac_mesoD3_peaks   Data format 
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 SRR1576311_H3K27ac_ab_mesendo_peaks  SRR1576311_H3K27ac_ab_mesendo_peaks   Data format 
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 SRR1576312_H3K27ac_am_mesendo_peaks  SRR1576312_H3K27ac_am_mesendo_peaks   Data format 
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 SRR1576313_H3K27me3_mesendo_peaks  SRR1576313_H3K27me3_mesendo_peaks   Data format 
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 SRR1576314_H3K4me1_mesendo_peaks  SRR1576314_H3K4me1_mesendo_peaks   Data format 
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 SRR1576315_H3K4me3_mesendo_peaks  SRR1576315_H3K4me3_mesendo_peaks   Data format 
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 SRR1576316_H3K9me3_mesendo_peaks  SRR1576316_H3K9me3_mesendo_peaks   Data format 
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 SRR1576317_Hey1_meso_peaks  SRR1576317_Hey1_meso_peaks   Data format 
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 SRR1576318_Hnf1b_endo3d_peaks  SRR1576318_Hnf1b_endo3d_peaks   Data format 
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 SRR1576319_Hnf1b_h64_peaks  SRR1576319_Hnf1b_h64_peaks   Data format 
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 SRR1576320_Hnf1b_mesendo_peaks  SRR1576320_Hnf1b_mesendo_peaks   Data format 
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 SRR1576321_Hnf1b_endo_peaks  SRR1576321_Hnf1b_endo_peaks   Data format 
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 SRR1576322_Hnf4a_endo_peaks  SRR1576322_Hnf4a_endo_peaks   Data format 
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 SRR1576323_Hnf4a_mesendo_peaks  SRR1576323_Hnf4a_mesendo_peaks   Data format 
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 SRR1576324_Hnf4a_endo_peaks  SRR1576324_Hnf4a_endo_peaks   Data format 
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 SRR1576325_Hnf4a_h64_peaks  SRR1576325_Hnf4a_h64_peaks   Data format 
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 SRR1576326_Klf5_endo_peaks  SRR1576326_Klf5_endo_peaks   Data format 
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 SRR1576327_Klf5_mesendo_peaks  SRR1576327_Klf5_mesendo_peaks   Data format 
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 SRR1576328_Klf5_h64_peaks  SRR1576328_Klf5_h64_peaks   Data format 
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 SRR1576329_Lef1_meso_peaks  SRR1576329_Lef1_meso_peaks   Data format 
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 SRR1576330_Lef1_mesendo_peaks  SRR1576330_Lef1_mesendo_peaks   Data format 
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 SRR1576331_NR5A2_h64_peaks  SRR1576331_NR5A2_h64_peaks   Data format 
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 SRR1576332_NR5A2_mesendo_peaks  SRR1576332_NR5A2_mesendo_peaks   Data format 
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 SRR1576333_Nanog_h64_peaks  SRR1576333_Nanog_h64_peaks   Data format 
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 SRR1576334_Nanog_endo_peaks  SRR1576334_Nanog_endo_peaks   Data format 
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 SRR1576335_Nanog_meso_peaks  SRR1576335_Nanog_meso_peaks   Data format 
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 SRR1576336_Nanog_h64_peaks  SRR1576336_Nanog_h64_peaks   Data format 
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 SRR1576337_Nanog_h64_peaks  SRR1576337_Nanog_h64_peaks   Data format 
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 SRR1576338_Nanog_h64_peaks  SRR1576338_Nanog_h64_peaks   Data format 
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 SRR1576339_Nanog_mesendo_peaks  SRR1576339_Nanog_mesendo_peaks   Data format 
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 SRR1576340_Nanog_endo_peaks  SRR1576340_Nanog_endo_peaks   Data format 
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 SRR1576341_Nanog_ecto_peaks  SRR1576341_Nanog_ecto_peaks   Data format 
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 SRR1576342_Otx2_h64_peaks  SRR1576342_Otx2_h64_peaks   Data format 
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 SRR1576343_Otx2_endo_peaks  SRR1576343_Otx2_endo_peaks   Data format 
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 SRR1576344_Otx2_mesendo_peaks  SRR1576344_Otx2_mesendo_peaks   Data format 
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 SRR1576345_Otx2_ecto_peaks  SRR1576345_Otx2_ecto_peaks   Data format 
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 SRR1576346_Otx2_endo_peaks  SRR1576346_Otx2_endo_peaks   Data format 
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 SRR1576347_Otx2_h64_peaks  SRR1576347_Otx2_h64_peaks   Data format 
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 SRR1576348_Otx2_ecto_peaks  SRR1576348_Otx2_ecto_peaks   Data format 
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 SRR1576349_Otx2_h64_peaks  SRR1576349_Otx2_h64_peaks   Data format 
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 SRR1576350_Otx2_h64_peaks  SRR1576350_Otx2_h64_peaks   Data format 
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 SRR1576351_Otx2_meso_peaks  SRR1576351_Otx2_meso_peaks   Data format 
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 SRR1576352_Pax6_endo3d_peaks  SRR1576352_Pax6_endo3d_peaks   Data format 
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 SRR1576353_Pax6_ecto_peaks  SRR1576353_Pax6_ecto_peaks   Data format 
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 SRR1576354_Pol2_h64_peaks  SRR1576354_Pol2_h64_peaks   Data format 
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 SRR1576355_Pol2_h64_peaks  SRR1576355_Pol2_h64_peaks   Data format 
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 SRR1576356_Pol2_meso_peaks  SRR1576356_Pol2_meso_peaks   Data format 
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 SRR1576357_Pol2_mesendo_peaks  SRR1576357_Pol2_mesendo_peaks   Data format 
hide
 SRR1576358_Pol2_endo_peaks  SRR1576358_Pol2_endo_peaks   Data format 
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 SRR1576359_Pol2_ecto_peaks  SRR1576359_Pol2_ecto_peaks   Data format 
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 SRR1576360_Pou5f1_endo_peaks  SRR1576360_Pou5f1_endo_peaks   Data format 
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 SRR1576361_Pou5f1_meso_peaks  SRR1576361_Pou5f1_meso_peaks   Data format 
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 SRR1576362_Pou5f1_h64_peaks  SRR1576362_Pou5f1_h64_peaks   Data format 
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 SRR1576363_Pou5f1_h64_peaks  SRR1576363_Pou5f1_h64_peaks   Data format 
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 SRR1576364_Pou5f1_mesendo_peaks  SRR1576364_Pou5f1_mesendo_peaks   Data format 
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 SRR1576365_Pou5f1_ecto_peaks  SRR1576365_Pou5f1_ecto_peaks   Data format 
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 SRR1576366_Pou5f1_h64_peaks  SRR1576366_Pou5f1_h64_peaks   Data format 
hide
 SRR1576367_Rex1_meso_peaks  SRR1576367_Rex1_meso_peaks   Data format 
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 SRR1576368_Rex1_endo_peaks  SRR1576368_Rex1_endo_peaks   Data format 
hide
 SRR1576369_Rex1_h64_peaks  SRR1576369_Rex1_h64_peaks   Data format 
hide
 SRR1576370_Sall4_h64_peaks  SRR1576370_Sall4_h64_peaks   Data format 
hide
 SRR1576371_Sall4_mesendo_peaks  SRR1576371_Sall4_mesendo_peaks   Data format 
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 SRR1576372_Smad1_endo_peaks  SRR1576372_Smad1_endo_peaks   Data format 
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 SRR1576373_Smad1_meso_peaks  SRR1576373_Smad1_meso_peaks   Data format 
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 SRR1576374_Smad1_ecto_peaks  SRR1576374_Smad1_ecto_peaks   Data format 
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 SRR1576375_Smad1_endoC1_peaks  SRR1576375_Smad1_endoC1_peaks   Data format 
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 SRR1576376_Smad1_endoD2_peaks  SRR1576376_Smad1_endoD2_peaks   Data format 
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 SRR1576377_Smad1_endoD22_peaks  SRR1576377_Smad1_endoD22_peaks   Data format 
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 SRR1576378_Smad1_endoD3_peaks  SRR1576378_Smad1_endoD3_peaks   Data format 
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 SRR1576379_Smad1_mesoC1_peaks  SRR1576379_Smad1_mesoC1_peaks   Data format 
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 SRR1576380_Smad1_mesoD2_peaks  SRR1576380_Smad1_mesoD2_peaks   Data format 
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 SRR1576381_Smad1_mesoD22_peaks  SRR1576381_Smad1_mesoD22_peaks   Data format 
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 SRR1576382_Smad1_mesoD3_peaks  SRR1576382_Smad1_mesoD3_peaks   Data format 
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 SRR1576383_Smad1_h64_peaks  SRR1576383_Smad1_h64_peaks   Data format 
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 SRR1576384_Smad1_mesendo_peaks  SRR1576384_Smad1_mesendo_peaks   Data format 
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 SRR1576385_Smad23_h64_peaks  SRR1576385_Smad23_h64_peaks   Data format 
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 SRR1576386_Smad23_ecto_peaks  SRR1576386_Smad23_ecto_peaks   Data format 
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 SRR1576387_Smad23_endo_peaks  SRR1576387_Smad23_endo_peaks   Data format 
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 SRR1576388_Smad23_mesendo_peaks  SRR1576388_Smad23_mesendo_peaks   Data format 
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 SRR1576389_Smad4_h64_peaks  SRR1576389_Smad4_h64_peaks   Data format 
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 SRR1576390_Smad4_endo_peaks  SRR1576390_Smad4_endo_peaks   Data format 
hide
 SRR1576391_Smad4_mesendo_peaks  SRR1576391_Smad4_mesendo_peaks   Data format 
hide
 SRR1576392_Smad4_meso_peaks  SRR1576392_Smad4_meso_peaks   Data format 
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 SRR1576393_Smad4_ecto_peaks  SRR1576393_Smad4_ecto_peaks   Data format 
hide
 SRR1576394_Smad4_meso_peaks  SRR1576394_Smad4_meso_peaks   Data format 
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 SRR1576395_Smad4_h64_peaks  SRR1576395_Smad4_h64_peaks   Data format 
hide
 SRR1576396_Snai2_h64_peaks  SRR1576396_Snai2_h64_peaks   Data format 
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 SRR1576397_Snai2_meso_peaks  SRR1576397_Snai2_meso_peaks   Data format 
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 SRR1576398_Sox17_h64_peaks  SRR1576398_Sox17_h64_peaks   Data format 
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 SRR1576399_Sox17_mesendo_peaks  SRR1576399_Sox17_mesendo_peaks   Data format 
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 SRR1576400_Sox17_meso_peaks  SRR1576400_Sox17_meso_peaks   Data format 
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 SRR1576401_Sox17_endo_peaks  SRR1576401_Sox17_endo_peaks   Data format 
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 SRR1576402_Sox2_endo_peaks  SRR1576402_Sox2_endo_peaks   Data format 
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 SRR1576403_Sox2_meso_peaks  SRR1576403_Sox2_meso_peaks   Data format 
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 SRR1576404_Sox2_h64_peaks  SRR1576404_Sox2_h64_peaks   Data format 
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 SRR1576405_Sox2_mesendo_peaks  SRR1576405_Sox2_mesendo_peaks   Data format 
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 SRR1576406_Sox2_h64_peaks  SRR1576406_Sox2_h64_peaks   Data format 
hide
 SRR1576407_Sp1_cs_h64_peaks  SRR1576407_Sp1_cs_h64_peaks   Data format 
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 SRR1576408_Sp1_cs_endo_peaks  SRR1576408_Sp1_cs_endo_peaks   Data format 
hide
 SRR1576409_Sp1_cs_h64_peaks  SRR1576409_Sp1_cs_h64_peaks   Data format 
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 SRR1576410_Srf_h64_peaks  SRR1576410_Srf_h64_peaks   Data format 
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 SRR1576411_Srf_endo_peaks  SRR1576411_Srf_endo_peaks   Data format 
hide
 SRR1576412_Srf_h64_peaks  SRR1576412_Srf_h64_peaks   Data format 
hide
 SRR1576413_Srf_h64_peaks  SRR1576413_Srf_h64_peaks   Data format 
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 SRR1576414_Srf_mesendo_peaks  SRR1576414_Srf_mesendo_peaks   Data format 
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 SRR1576415_Srf_meso_peaks  SRR1576415_Srf_meso_peaks   Data format 
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 SRR1576416_Srf_ecto_peaks  SRR1576416_Srf_ecto_peaks   Data format 
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 SRR1576417_Stat3_endo_peaks  SRR1576417_Stat3_endo_peaks   Data format 
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 SRR1576418_Stat3_meso_peaks  SRR1576418_Stat3_meso_peaks   Data format 
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 SRR1576419_Stat3_cs_h64_peaks  SRR1576419_Stat3_cs_h64_peaks   Data format 
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 SRR1576420_T_h64_peaks  SRR1576420_T_h64_peaks   Data format 
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 SRR1576421_T_mesendo_peaks  SRR1576421_T_mesendo_peaks   Data format 
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 SRR1576422_T_mesendo_peaks  SRR1576422_T_mesendo_peaks   Data format 
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 SRR1576423_Tal1_h64_peaks  SRR1576423_Tal1_h64_peaks   Data format 
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 SRR1576424_Tal1_ab_meso_peaks  SRR1576424_Tal1_ab_meso_peaks   Data format 
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 SRR1576425_Tcf4_endo_peaks  SRR1576425_Tcf4_endo_peaks   Data format 
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 SRR1576426_Tcf4_mesendo_peaks  SRR1576426_Tcf4_mesendo_peaks   Data format 
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 SRR1576427_Tcf4_meso_peaks  SRR1576427_Tcf4_meso_peaks   Data format 
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 SRR1576428_Tcf4_ecto_peaks  SRR1576428_Tcf4_ecto_peaks   Data format 
hide
 SRR1576429_Tcf4_h64_peaks  SRR1576429_Tcf4_h64_peaks   Data format 
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 SRR1576430_Thap11_ecto_peaks  SRR1576430_Thap11_ecto_peaks   Data format 
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 SRR1576431_Thap11_endo_peaks  SRR1576431_Thap11_endo_peaks   Data format 
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 SRR1576432_Thap11_meso_peaks  SRR1576432_Thap11_meso_peaks   Data format 
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 SRR1576433_Thap11_mesendo_peaks  SRR1576433_Thap11_mesendo_peaks   Data format 
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 SRR1576434_Thap11_ab_h64_peaks  SRR1576434_Thap11_ab_h64_peaks   Data format 
hide
 SRR1576435_Trim28-KAP1_ecto_peaks  SRR1576435_Trim28-KAP1_ecto_peaks   Data format 
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 SRR1576436_Trim28-KAP1_endo_peaks  SRR1576436_Trim28-KAP1_endo_peaks   Data format 
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 SRR1576437_Trim28-KAP1_meso_peaks  SRR1576437_Trim28-KAP1_meso_peaks   Data format 
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 SRR1576438_Trim28-KAP1_mesendo_peaks  SRR1576438_Trim28-KAP1_mesendo_peaks   Data format 
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 SRR1576439_Trim28-KAP1_ab_h64_peaks  SRR1576439_Trim28-KAP1_ab_h64_peaks   Data format 
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 SRR1576440_type_WCE_HUES64_peaks  SRR1576440_type_WCE_HUES64_peaks   Data format 
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 SRR1576441_type_WCE_HUES64_peaks  SRR1576441_type_WCE_HUES64_peaks   Data format 
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 SRR1576442_WCE_h64_peaks  SRR1576442_WCE_h64_peaks   Data format 
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 SRR1576443_WCE_meso_peaks  SRR1576443_WCE_meso_peaks   Data format 
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 SRR1576444_cMyc_endo_peaks  SRR1576444_cMyc_endo_peaks   Data format 
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 SRR1576445_cMyc_meso_peaks  SRR1576445_cMyc_meso_peaks   Data format 
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 SRR1576446_cMyc_ecto_peaks  SRR1576446_cMyc_ecto_peaks   Data format 
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 SRR1576447_cMyc_h64_peaks  SRR1576447_cMyc_h64_peaks   Data format 
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 SRR1576448_cMyc_mesendo_peaks  SRR1576448_cMyc_mesendo_peaks   Data format 
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 SRR1576449_dHand_meso_peaks  SRR1576449_dHand_meso_peaks   Data format 
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 SRR1576450_eHand_meso_peaks  SRR1576450_eHand_meso_peaks   Data format 
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 SRR1576451_eHand_h64_peaks  SRR1576451_eHand_h64_peaks   Data format 
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 SRR1576452_eHand_mesendo_peaks  SRR1576452_eHand_mesendo_peaks   Data format 
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 SRR1576453_RRBS_endoC1_peaks  SRR1576453_RRBS_endoC1_peaks   Data format 
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 SRR1576454_RRBS_endoD2_peaks  SRR1576454_RRBS_endoD2_peaks   Data format 
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 SRR1576455_RRBS_mesoC1_peaks  SRR1576455_RRBS_mesoC1_peaks   Data format 
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 SRR1576456_RRBS_mesoD2_peaks  SRR1576456_RRBS_mesoD2_peaks   Data format 
    
Assembly: Human Feb. 2009 (GRCh37/hg19)

Description

This track shows the individual summits from a large scale ChIP-SEQ study described in Tsankov et al., "Transcription factor binding dynamics during human ES cell differentiation", Nature 2015. In this work, the authors performed ~38 ChIP-SEQ of transcription factors in stem cells at different stages of differentiation (pluripotent state, endodem, mesoendoderm, etc).

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Methods

We obtained the sequencing reads from NCBI GEO GSE61475. Bowtie2 2.3.2 was run with in single-end mode and with --end-to-end --sensitive. MACS 2.1.1.20160309 was run with --keep-dup all and no input/control read file.

References

Tsankov AM, Gu H, Akopian V, Ziller MJ, Donaghey J, Amit I, Gnirke A, Meissner A. Transcription factor binding dynamics during human ES cell differentiation. Nature. 2015 Feb 19;518(7539):344-9. PMID: 25693565; PMC: PMC4499331

Email max@soe.ucsc.edu or jferna10@ucsc.edu