Startup (bottleneck delay 0 ms, not applied if under 10000) : 903 millis
Get cart of 1454 for user:(null) session:(null): 0 millis
before chromAliasSetup: 1 millis
after chromAliasSetup: 25 millis
Time before getTrackList: 615 millis
Time after trackDbLoad : 274 millis
Time after visibilities: 454 millis
parentChildCartCleanup: 27 millis
Waiting for parallel (55 threads for 55 tracks) remote data fetch: 4182 millis
UCSC Genome Browser on Human (GRCh38/hg38)
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chr1:68,412,549-68,463,098 50,550 bp.
Time at start of obtaining trash hgt png image file: 46 millis
Time completed writing trash hgt png image file: 787 millis
move start
  Click on a feature for details. Shift+click+drag to zoom in. Click grey side bars for track options. Drag side bars or labels up or down to reorder tracks. Drag tracks left or right to new position. Press "?" for keyboard shortcuts. Use drop-down controls below and press refresh to alter tracks displayed.   move end
  
-   Custom Tracks
DNase_Retina_d74_85
DNase_Retina_d89
GSX2_CnR__LGE_1
GSX2_CnR__LGE_2
H3K27ac fRPE FrazerLab
H3K27ac iRPE FrazerLab
DNaseSig_Retina_d89
DNaseSig_Retina_d103_125
DNaseSig_Retina_d74_85
DNase_Retina_d103_125
-   hufATAC
bulkATAC Common Peaks
bulkATAC iPSC Peaks
bulkATAC Peaks
bulkATAC RPE GFP Peaks
bulkATAC RPE RFP Peaks
Cicero Peak Links
CutRun ChIP
ENCODE_bw
ENCODE_peaks
HiC AB
HiC Loops
HINT
LongRead_RNA
RPE bulkATAC Density
scATAC 10x Peaks
scATAC Group Density
scATAC Peaks
scATAC Time Density
SE_RPE
sig_HINT
-   Mapping and Sequencing
Base Position
p14 Fix Patches
p14 Alt Haplotypes
Assembly
Centromeres
Chromosome Band
Clone Ends
Exome Probesets
FISH Clones
Gap
GC Percent
GRC Contigs
GRC Incident
Hg19 Diff
INSDC
LiftOver & ReMap
LRG Regions
Mappability
Problematic Regions
Recomb Rate
RefSeq Acc
Restr Enzymes
Scaffolds
Short Match
STS Markers
-   Genes and Gene Predictions
GENCODE V44
NCBI RefSeq
CCDS
CRISPR Targets
updated GENCODE Versions
HGNC
IKMC Genes Mapped
LRG Transcripts
MANE
MGC Genes
Non-coding RNA
Old UCSC Genes
ORFeome Clones
Other RefSeq
Pfam in GENCODE
Prediction Archive
RetroGenes V9
TransMap V5
UCSC Alt Events
UniProt
-   Phenotype and Literature
OMIM Alleles
COVID Rare Harmful Var
new AbSplice Scores
CADD
Cancer Gene Expr
ClinGen
ClinGen CNVs
ClinVar Variants
Constraint scores
Coriell CNVs
COSMIC
COSMIC Regions
DECIPHER CNVs
DECIPHER SNVs
Development Delay
new Dosage Sensitivity
GenCC
Gene Interactions
GeneReviews
GWAS Catalog
HGMD public
LOVD Variants
OMIM Cyto Loci
OMIM Genes
Orphanet
PanelApp
REVEL Scores
SNPedia
TCGA Pan-Cancer
UniProt Variants
updated Variants in Papers
-   Human Pangenome - HPRC
new Multiple Alignment
new Pairwise Alignments
new Rearrangements
new Short Variants
-   Single Cell RNA-seq
Blood (PBMC) Hao
Colon Wang
Cortex Velmeshev
Cross Tissue Nuclei
Fetal Gene Atlas
Heart Cell Atlas
Ileum Wang
Kidney Stewart
Liver MacParland
Lung Travaglini
Merged Cells
Muscle De Micheli
Pancreas Baron
Placenta Vento-Tormo
Rectum Wang
Skin Sole-Boldo
Tabula Sapiens
-   mRNA and EST
Human ESTs
Human mRNAs
Other ESTs
Other mRNAs
SIB Alt-Splicing
Spliced ESTs
-   Expression
GTEx Gene V8
GTEx RNA-Seq Coverage
Affy Archive
EPDnew Promoters
GNF Atlas 2
GTEx Gene
GTEx Transcript
GWIPS-viz Riboseq
miRNA Tissue Atlas
-   Regulation
ENCODE cCREs
ENCODE Regulation
CpG Islands
new FANTOM5
GeneHancer
GTEx cis-eQTLs
Hi-C and Micro-C
updated JASPAR Transcription Factors
ORegAnno
RefSeq Func Elems
ReMap ChIP-seq
VISTA Enhancers
-   Comparative Genomics
Conservation
Cactus 241-way
Cons 30 Primates
Primate Chain/Net
Placental Chain/Net
Vertebrate Chain/Net
Cactus 447-way
CHM13 alignments
Multiz 470-way
-   Variation
dbSNP 155
COVID GWAS v4
COVID GWAS v3
1000G Archive
updated Array Probesets
dbSNP Archive
dbVar Common Struct Var
DGV Struct Var
Genome In a Bottle
gnomAD Variants
Platinum Genomes
-   Repeats
RepeatMasker
Interrupted Rpts
Microsatellite
RepeatMasker Viz.
Segmental Dups
Self Chain
Simple Repeats
WM + SDust
track, load time, draw time, total (first window)
DNase_Retina_d74_85, 17, 0, 17
DNase_Retina_d89, 16, 0, 16
GSX2_CnR__LGE_1, 4, 0, 4
GSX2_CnR__LGE_2, 1, 0, 1
H3K27ac fRPE FrazerLab, 1, 2, 3
H3K27ac iRPE FrazerLab, 1, 1, 2
DNaseSig_Retina_d89, 5, 3, 8
DNaseSig_Retina_d103_125, 4, 2, 6
DNaseSig_Retina_d74_85, 4, 2, 6
DNase_Retina_d103_125, 16, 0, 16
bulkATAC iPSC Density, 0, 10, 10
bulkATAC RPE GFP Density, 0, 7, 7
bulkATAC RPE RFP Density, 0, 9, 9
bulkATAC Common Peaks, 544, 1, 545
Cicero Links, 490, 0, 490
iPSC Cicero Links, 435, 0, 435
OV Cicero Links, 434, 0, 434
Retina Immture Cicero Links, 443, 1, 444
RPE Immature Cicero Links, 436, 0, 436
RPE Mature Cicero Links, 436, 0, 436
CTCF_HRPEpiC, 544, 2, 546
DNase_HRPEpiC, 507, 1, 508
DNase_retina_103days, 545, 1, 546
DNase_retina_74days, 519, 2, 521
DNase_retina_89days, 516, 2, 518
H3K4me3_HRPEpiC, 511, 2, 513
CTCF_HRPEpiC, 521, 0, 521
DNase_HRPEpiC, 543, 0, 543
DNase_retina_103days, 526, 0, 526
DNase_retina_74days, 546, 0, 546
DNase_retina_89days, 522, 0, 522
H3K4me3_HRPEpiC, 546, 0, 546
HiC Loops (GFP), 437, 0, 437
HiC Loops (iPSC), 440, 0, 440
HiC Loops (RFP), 432, 0, 432
scATAC 10x Peaks, 514, 0, 514
scATAC iPSC, 515, 2, 517
scATAC OV, 511, 2, 513
scATAC Retina Immature, 506, 1, 507
scATAC RPE Immature, 510, 3, 513
scATAC RPE Mature, 506, 2, 508
scATAC Peaks, 506, 0, 506
scATAC D0, 501, 2, 503
scATAC D10, 496, 3, 499
scATAC D15, 499, 2, 501
scATAC D2, 505, 2, 507
scATAC D20, 503, 2, 505
scATAC D25, 500, 3, 503
scATAC D40, 492, 2, 494
scATAC TW, 497, 2, 499
SE_RPE, 486, 0, 486
GENCODE V44, 4, 0, 4
OMIM Alleles, 3, 0, 3
Mutation: A, 39, 1, 40
Mutation: C, 38, 1, 39
Mutation: G, 37, 1, 38
Mutation: T, 28, 1, 29
Deletions, 19, 0, 19
Insertions, 20, 0, 20
ENCODE cCREs, 3, 0, 3
DNase Signal, 29, 3, 32
HRPEpiC Sg, 2, 1, 3
HRPEpiC Pk, 50, 1, 51
HRPEpiC Ht, 51, 0, 51
Invisible link
Done with trackForm: 124 millis
Time at end of doMiddle, next up cart write: 13 millis
Time to write and close cart: 48 millis
Overall total time: 7499 millis