Startup (bottleneck 0 ms) : 939 millis
Get cart of 1418 for user:(null) session:(null): 0 millis
Time before getTrackList: 1013 millis
Time after trackDbLoad : 39 millis
Time after visibilities: 458 millis
parentChildCartCleanup: 11 millis
Waiting for parallel (42 threads for 42 tracks) remote data fetch: 2666 millis
UCSC Genome Browser on Human Dec. 2013 (GRCh38/hg38) Assembly
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chr11:88,994,413-89,706,446 712,034 bp.
Time at start of obtaining trash hgt png image file: 14 millis
Time completed writing trash hgt png image file: 713 millis
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Tracks with lots of items will automatically be displayed in more compact modes.
-   Custom Tracks
DNase_Retina_d74_85
DNase_Retina_d89
GSX2_CnR__LGE_1
GSX2_CnR__LGE_2
H3K27ac fRPE FrazerLab
H3K27ac iRPE FrazerLab
DNaseSig_Retina_d89
DNaseSig_Retina_d103_125
DNaseSig_Retina_d74_85
DNase_Retina_d103_125
-   hufATAC
bulkATAC Common Peaks
bulkATAC iPSC Peaks
bulkATAC RPE GFP Peaks
bulkATAC RPE RFP Peaks
Cicero Peak Links
HiC AB
HiC Loops
HINT
RPE bulkATAC Density
scATAC 10x Peaks
scATAC Group Density
scATAC Time Density
sig_HINT
-   Mapping and Sequencing
Base Position
Fix Patches
Alt Haplotypes
Assembly
Centromeres
Chromosome Band
Clone Ends
Exome Probesets
FISH Clones
Gap
GC Percent
GRC Contigs
GRC Incident
Hg19 Diff
Hg19 Mapping
INSDC
LRG Regions
Mappability
RefSeq Acc
Restr Enzymes
Scaffolds
Short Match
STS Markers
-   Genes and Gene Predictions
GENCODE V36
NCBI RefSeq
updated All GENCODE
CCDS
CRISPR Targets
IKMC Genes Mapped
LRG Transcripts
updated MANE select v0.95
MGC Genes
Non-coding RNA
Old UCSC Genes
ORFeome Clones
Other RefSeq
Pfam in GENCODE
new Prediction Archive
RetroGenes V9
TransMap V5
UCSC Alt Events
UniProt
-   Phenotype and Literature
OMIM Alleles
CADD
Cancer Gene Expr
ClinGen
deprecated ClinGen CNVs
ClinVar Variants
Coriell CNVs
COSMIC Regions
Development Delay
Gene Interactions
GeneReviews
GWAS Catalog
HGMD Variants
LOVD Variants
OMIM Cyto Loci
OMIM Genes
new REVEL Scores
SNPedia
TCGA Pan-Cancer
UniProt Variants
Variants in Papers
-   COVID-19
COVID GWAS v4
COVID GWAS v3
Rare Harmful Vars
-   mRNA and EST
Human ESTs
Human mRNAs
Other ESTs
Other mRNAs
SIB Alt-Splicing
Spliced ESTs
-   Expression
GTEx Gene V8
new Affy Archive
EPDnew Promoters
GNF Atlas 2
GTEx Gene
GTEx Transcript
GWIPS-viz Riboseq
miRNA Tissue Atlas
-   Regulation
ENCODE cCREs
ENCODE Regulation
CpG Islands
GeneHancer
Hi-C and Micro-C
new JASPAR Transcription Factors
ORegAnno
RefSeq Func Elems
-   Comparative Genomics
Conservation
new Cactus 241-way
Cons 30 Primates
Primate Chain/Net
Placental Chain/Net
Vertebrate Chain/Net
-   Variation
dbSNP 153
new 1000G Archive
new dbSNP Archive
dbVar Common Struct Var
DGV Struct Var
Genome In a Bottle
updated gnomAD Variants
Platinum Genomes
-   Repeats
RepeatMasker
Interrupted Rpts
Microsatellite
RepeatMasker Viz.
Segmental Dups
Self Chain
Simple Repeats
WM + SDust
track, load time, draw time, total (first window)
DNase_Retina_d74_85, 764, 0, 764
DNase_Retina_d89, 655, 0, 655
GSX2_CnR__LGE_1, 4, 0, 4
GSX2_CnR__LGE_2, 2, 0, 2
H3K27ac fRPE FrazerLab, 3, 1, 4
H3K27ac iRPE FrazerLab, 2, 0, 2
DNaseSig_Retina_d89, 784, 1, 785
DNaseSig_Retina_d103_125, 822, 2, 824
DNaseSig_Retina_d74_85, 960, 2, 962
DNase_Retina_d103_125, 655, 0, 655
bulkATAC iPSC Density, 0, 8, 8
bulkATAC RPE GFP Density, 0, 7, 7
bulkATAC RPE RFP Density, 1, 7, 8
bulkATAC Common Peaks, 692, 0, 692
Cicero Links, 698, 1, 699
iPSC Cicero Links, 693, 0, 693
OV Cicero Links, 698, 0, 698
Retina Immture Cicero Links, 694, 0, 694
RPE Immature Cicero Links, 523, 0, 523
RPE Mature Cicero Links, 467, 0, 467
HiC Loops (GFP), 527, 1, 528
HiC Loops (iPSC), 2046, 0, 2046
HiC Loops (RFP), 464, 0, 464
scATAC 10x Peaks, 522, 0, 522
scATAC iPSC, 705, 2, 707
scATAC OV, 752, 2, 754
scATAC Retina Immature, 701, 2, 703
scATAC RPE Immature, 531, 2, 533
scATAC RPE Mature, 471, 1, 472
scATAC D0, 464, 1, 465
scATAC D10, 471, 2, 473
scATAC D15, 2648, 2, 2650
scATAC D2, 693, 2, 695
scATAC D20, 471, 3, 474
scATAC D25, 466, 1, 467
scATAC D40, 468, 2, 470
scATAC TW, 471, 2, 473
GENCODE V36, 6, 3, 9
OMIM Alleles, 10, 0, 10
Mutation: A, 46, 0, 46
Mutation: C, 22, 0, 22
Mutation: G, 28, 0, 28
Mutation: T, 21, 0, 21
Deletions, 23, 0, 23
Insertions, 15, 0, 15
ENCODE cCREs, 2, 0, 2
DNase Signal, 14, 3, 17
HRPEpiC Pk, 33, 0, 33
HRPEpiC Ht, 69, 0, 69
HRPEpiC Sg, 3, 2, 5
Done with trackForm: 5 millis
Time at end of doMiddle, next up cart write: 8 millis
Time to write and close cart: 5 millis
Overall total time: 5871 millis