Human Protein
  Human position: chr17:10365324-10391962
Human mRNA: BC093082
Protein length: 708

The alignment you clicked on is first in the table below.

alignment peptide  96.8%     86.4%     1   708 100.0%    -   chr11:53,001,922-53,118,116 
alignment peptide 96.9% 95.5% 1 708 100.0% - chr11:52,974,075-53,025,982
alignment peptide 97.5% 92.5% 1 707 99.9% - chr11:52,864,808-52,997,347
alignment peptide 96.8% 90.7% 1 700 98.9% - chr11:52,795,471-52,937,010
alignment peptide 86.6% 94.0% 2 631 89.0% - chr11:52,881,695-52,891,791
alignment peptide 94.9% 81.8% 4 704 99.0% - chr1:161,507,303-161,526,751
alignment peptide 85.9% 88.0% 1 631 89.1% - chr11:52,826,901-52,842,701
alignment peptide 84.0% 82.2% 4 704 99.0% - chr1:161,476,773-161,501,295
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Data last updated at UCSC: 2008-08-19


This track contains tBLASTn alignments of the peptides from the predicted and known genes identified in the hg18 UCSC Genes track.


First, the predicted proteins from the human UCSC Genes track were aligned with the human genome using the Blat program to discover exon boundaries. Next, the amino acid sequences that make up each exon were aligned with the horse sequence using the tBLASTn program. Finally, the putative horse exons were chained together using an organism-specific maximum gap size but no gap penalty. The single best exon chains extending over more than 60% of the query protein were included. Exon chains that extended over 60% of the query and matched at least 60% of the protein's amino acids were also included.


tBLASTn is part of the NCBI BLAST tool set. For more information on BLAST, see Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403-410.

Blat was written by Jim Kent. The remaining utilities used to produce this track were written by Jim Kent or Brian Raney.