Human Gene CDC25C (uc003lcp.1)
  Description: Homo sapiens cell division cycle 25C (CDC25C), transcript variant 1, mRNA.
RefSeq Summary (NM_001790): This gene encodes a conserved protein that plays a key role in the regulation of cell division. The encoded protein directs dephosphorylation of cyclin B-bound CDC2 and triggers entry into mitosis. It also suppresses p53-induced growth arrest. Multiple alternatively spliced transcript variants of this gene have been described. [provided by RefSeq, Dec 2015].
Transcript (Including UTRs)
   Position: hg19 chr5:137,620,959-137,667,516 Size: 46,558 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr5:137,621,381-137,666,869 Size: 45,489 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:137,620,959-137,667,516)mRNA (may differ from genome)Protein (473 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MPIP3_HUMAN
DESCRIPTION: RecName: Full=M-phase inducer phosphatase 3; EC=3.1.3.48; AltName: Full=Dual specificity phosphatase Cdc25C;
FUNCTION: Functions as a dosage-dependent inducer in mitotic control. Tyrosine protein phosphatase required for progression of the cell cycle. When phosphorylated, highly effective in activating G2 cells into prophase. Directly dephosphorylates CDK1 and activates its kinase activity.
CATALYTIC ACTIVITY: Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate.
SUBUNIT: Interacts with HIV-1 Vpr, thereby inactivating CDC25C phosphatase activity. Interacts with MAPK14 and 14-3-3 proteins. When phosphorylated on Ser-129 and/or Thr-130, interacts with PLK1.
INTERACTION: P06493:CDK1; NbExp=2; IntAct=EBI-974439, EBI-444308; O14757:CHEK1; NbExp=2; IntAct=EBI-974439, EBI-974488; Q9Y250:LZTS1; NbExp=2; IntAct=EBI-974439, EBI-1216080;
SUBCELLULAR LOCATION: Nucleus.
DEVELOPMENTAL STAGE: Expressed predominantly in G2 phase.
PTM: Phosphorylated by CHEK1 and MAPK14 at Ser-216. This phosphorylation creates a binding site for 14-3-3 protein and inhibits the phosphatase. Phosphorylated by PLK4. Phosphorylated by PLK1, leading to activate the phosphatase activity. Phosphorylation by PLK3 at Ser-191 promotes nuclear translocation. Ser-198 is a minor phosphorylation site. Was initially reported to be phosphorylated by PLK3 at Ser-216 (PubMed:10557092). However, such phosphorylation by PLK3 was not confirmed by other groups. Phosphorylation at Thr-48, Thr-67, Ser-122, Thr-130, Ser-168 and Ser-214 occurs at G2 and G2-M transition and is probably catalyzed by CDK1. Ser-168 phosphorylation levels are lower than those at the other 5 CDK1 sites. Phosphorylation by CDK1 leads to increased activity.
SIMILARITY: Belongs to the MPI phosphatase family.
SIMILARITY: Contains 1 rhodanese domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/cdc25c/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): CDC25C
CDC HuGE Published Literature: CDC25C

-  MalaCards Disease Associations
  MalaCards Gene Search: CDC25C
Diseases sorted by gene-association score: plague (5), prostate cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.05 RPKM in Testis
Total median expression: 27.27 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -85.09271-0.314 Picture PostScript Text
3' UTR -115.60422-0.274 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000751 - MPI_Phosphatase
IPR001763 - Rhodanese-like_dom

Pfam Domains:
PF00581 - Rhodanese-like domain
PF06617 - M-phase inducer phosphatase

SCOP Domains:
52821 - Rhodanese/Cell cycle control phosphatase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3BZI - X-ray MuPIT 3OP3 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P30307
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0004725 protein tyrosine phosphatase activity
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0019901 protein kinase binding
GO:0050699 WW domain binding

Biological Process:
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000086 G2/M transition of mitotic cell cycle
GO:0006470 protein dephosphorylation
GO:0006977 DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007049 cell cycle
GO:0007088 regulation of mitotic nuclear division
GO:0007283 spermatogenesis
GO:0008283 cell proliferation
GO:0016032 viral process
GO:0035335 peptidyl-tyrosine dephosphorylation
GO:0051301 cell division
GO:1902751 positive regulation of cell cycle G2/M phase transition

Cellular Component:
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016607 nuclear speck
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  M34065 - Human cdc25Hs mRNA, complete cds.
LF385247 - JP 2014500723-A/192750: Polycomb-Associated Non-Coding RNAs.
BC019089 - Homo sapiens cell division cycle 25 homolog C (S. pombe), mRNA (cDNA clone MGC:29447 IMAGE:4858949), complete cds.
AK301828 - Homo sapiens cDNA FLJ56262 complete cds, highly similar to M-phase inducer phosphatase 3 (EC 3.1.3.48).
AK097710 - Homo sapiens cDNA FLJ40391 fis, clone TESTI2036833, highly similar to M-PHASE INDUCER PHOSPHATASE 3 (EC 3.1.3.48).
AJ304504 - Homo sapiens mRNA for M-phase inducer phosphatase 3 isoform cdc25Cdm, (CDC25C gene).
EU832624 - Synthetic construct Homo sapiens clone HAIB:100067653; DKFZo008B1231 cell division cycle 25 homolog C (S. pombe) protein (CDC25C) gene, encodes complete protein.
KJ896578 - Synthetic construct Homo sapiens clone ccsbBroadEn_05972 CDC25C gene, encodes complete protein.
EU832697 - Synthetic construct Homo sapiens clone HAIB:100067726; DKFZo004B1232 cell division cycle 25 homolog C (S. pombe) protein (CDC25C) gene, encodes complete protein.
MA620824 - JP 2018138019-A/192750: Polycomb-Associated Non-Coding RNAs.
JD491490 - Sequence 472514 from Patent EP1572962.
JD251894 - Sequence 232918 from Patent EP1572962.
JD474439 - Sequence 455463 from Patent EP1572962.
JD368622 - Sequence 349646 from Patent EP1572962.
JD419227 - Sequence 400251 from Patent EP1572962.
LF343079 - JP 2014500723-A/150582: Polycomb-Associated Non-Coding RNAs.
JD513233 - Sequence 494257 from Patent EP1572962.
JD334541 - Sequence 315565 from Patent EP1572962.
JD517068 - Sequence 498092 from Patent EP1572962.
MA578656 - JP 2018138019-A/150582: Polycomb-Associated Non-Coding RNAs.
CU676376 - Synthetic construct Homo sapiens gateway clone IMAGE:100019565 5' read CDC25C mRNA.
AF312681 - Homo sapiens CDC25C splicing variant 2 mRNA, partial cds.
AF277723 - Homo sapiens cell division cycle 25C splice variant 2 (CDC25C) mRNA, partial cds.
AF277724 - Homo sapiens cell division cycle 25C splice variant 3 (CDC25C) mRNA, partial cds.
AF277725 - Homo sapiens cell division cycle 25C splice variant 4 (CDC25C) mRNA, partial cds.
AF277726 - Homo sapiens cell division cycle 25C splice variant 5 (CDC25C) mRNA, partial cds.
AF086323 - Homo sapiens full length insert cDNA clone ZD53E04.
JD165844 - Sequence 146868 from Patent EP1572962.
JD327574 - Sequence 308598 from Patent EP1572962.
JD058889 - Sequence 39913 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04110 - Cell cycle
hsa04114 - Oocyte meiosis
hsa04914 - Progesterone-mediated oocyte maturation

BioCarta from NCI Cancer Genome Anatomy Project
h_mPRPathway - How Progesterone Initiates the Oocyte Maturation
h_cdc25Pathway - cdc25 and chk1 Regulatory Pathway in response to DNA damage
h_srcRPTPPathway - Activation of Src by Protein-tyrosine phosphatase alpha
h_g2Pathway - Cell Cycle: G2/M Checkpoint
h_plk3Pathway - Regulation of cell cycle progression by Plk3
h_ptc1Pathway - Sonic Hedgehog (SHH) Receptor Ptc1 Regulates cell cycle
h_rbPathway - RB Tumor Suppressor/Checkpoint Signaling in response to DNA damage

Reactome (by CSHL, EBI, and GO)

Protein P30307 (Reactome details) participates in the following event(s):

R-HSA-75010 Phosphorylation of Cdc25C at Ser 216 by Chk1
R-HSA-75809 Phosphorylation of Cdc25C at Ser216 by CHEK2
R-HSA-6802973 PLK3 phosphorylates CDC25C
R-HSA-75016 Association of p-S216-CDC25C with 14-3-3 proteins
R-HSA-5671749 p-T774-PKN1 phosphorylates CDC25C
R-HSA-170149 Translocation of active Cdc25C to the nucleus
R-HSA-156678 Activation of Cdc25C
R-HSA-5671737 p-T774-PKN1 binds CDC25C
R-HSA-8863011 p25-bound CDK5 phosphorylates CDC25C
R-HSA-8863674 CDC25C binds YWHAE (14-3-3-epsilon)
R-HSA-170159 Translocation of Cdc25 to the nucleus
R-HSA-170153 Dephosphorylation of nuclear Cyclin B1:phospho-Cdc2 (Thr 14, Tyr15) complexes by Cdc25 phosphatases
R-HSA-176187 Activation of ATR in response to replication stress
R-HSA-75035 Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex
R-HSA-6804115 TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain
R-HSA-6804114 TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest
R-HSA-5625740 RHO GTPases activate PKNs
R-HSA-69273 Cyclin A/B1/B2 associated events during G2/M transition
R-HSA-156711 Polo-like kinase mediated events
R-HSA-8862803 Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models
R-HSA-69481 G2/M Checkpoints
R-HSA-69473 G2/M DNA damage checkpoint
R-HSA-6791312 TP53 Regulates Transcription of Cell Cycle Genes
R-HSA-195258 RHO GTPase Effectors
R-HSA-69275 G2/M Transition
R-HSA-8863678 Neurodegenerative Diseases
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-194315 Signaling by Rho GTPases
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-1643685 Disease
R-HSA-1640170 Cell Cycle
R-HSA-212436 Generic Transcription Pathway
R-HSA-162582 Signal Transduction
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: D3DQB8, MPIP3_HUMAN, NM_001790, NP_001781, P30307, Q96PL3, Q9H168, Q9H2E8, Q9H2E9, Q9H2F1
UCSC ID: uc003lcp.1
RefSeq Accession: NM_001790
Protein: P30307 (aka MPIP3_HUMAN or MPI3_HUMAN)
CCDS: CCDS4202.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001790.3
exon count: 14CDS single in 3' UTR: no RNA size: 2115
ORF size: 1422CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3041.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.