Data Releases: Tracks, Tables, and Assemblies

This page contains track and table release information for the following genome assemblies:

For older log entries, please see this page.

Last updated 24 Mar 2017. Inquiries and feedback welcome.

10 Latest Changes (all assemblies)

Track Name Assembly
Rat (rn6) Chain/Nets rn6 ailMel1 bosTau8 calMil1 canFam3 cavPor3 danRer10 felCat8 galGal5 hg38 melGal5 mm10 monDom5 ornAna2 oryCun2 panTro5 rheMac8 tarSyr2 xenTro7
Vertebrate 20-way Conservation rn6
Initial rhiRox1 release (using Novogene Rrox_v1 (NCBI project 266995, GCA_000769185.1): Assembly, Gap, GC Percent, INSDC, Short Match, Restr Enzymes, AUGUSTUS, Genscan Genes, Other RefSeq, CpG Islands, Human Chain/Net, Tarsier Chain/Net, RepeatMasker, Microsatellite, Interrupted Rpts, WM + SDust, Simple Repeats. rhiRox1
Ensembl genes v86 for Green Monkey (chlSab2) chlSab2
Initial nasLar1 release (using Proboscis Monkey Functional Genome Consortium): Assembly, Augustus, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genbank-process tracks and supporting tables, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Microsatellite, RepeatMasker, Simple Repeats, Tarsier Chain and Net, Unmasked CpG, WM + SDust, supporting tables and files. nasLar1
Initial melGal5 release (using Turkey Genome Consortium): AUGUSTUS, Assembly, Chicken Chain and Net, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genbank-process tracks and supporting tables, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Medium ground finch Chain and Net, Microsatellite, Mouse Chain and Net, Opossum Chain and Net, Peregrine falcon Chain and Net, Rat Chain and Net, RefSeq Acc, RepeatMasker, Simple Repeats, Turkey Chain/Net, Unmasked CpG, WM + SDust, X. tropicalis Chain and Net, Zebra finch Chain and Net, Zebrafish Chain and Net, supporting tables and files. melGal5
RefSeq gene predictions from NCBI hg38
GRCh38 patch release 9, alternate sequences and reference sequence patches hg38

Human Dec. 2013 (GRCh38/hg38) (hg38, GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2))

Track Name
Rat (rn6) Chain/Nets
RefSeq gene predictions from NCBI
GRCh38 patch release 9, alternate sequences and reference sequence patches

Mouse Dec. 2011 (GRCm38/mm10) (mm10, Genome Reference Consortium Mouse Build 38 (GCA_000001635.2))

Track Name
Rat (rn6) Chain/Nets

Cat Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) (felCat8, International Cat Genome Sequencing Consortium)

Track Name
Rat (rn6) Chain/Nets

Chicken Dec 2015 (Gallus_gallus-5.0/galGal5) (galGal5, International Chicken Genome Consortium)

Track Name
Rat (rn6) Chain/Nets

Chimp May 2016 (Pan_tro 3.0/panTro5) (panTro5, Chimpanzee Sequencing and Analysis Consortium)

Track Name
Rat (rn6) Chain/Nets

Cow Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) (bosTau8, University of Maryland Bos_taurus_UMD_3.1.1)

Track Name
Rat (rn6) Chain/Nets

Dog Sep. 2011 (Broad CanFam3.1/canFam3) (canFam3, Broad CanFam3.1 (GCA_000002285.2))

Track Name
Rat (rn6) Chain/Nets

Elephant shark Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) (calMil1, Institute of Molecular and Cell Biology, Singapore)

Track Name
Rat (rn6) Chain/Nets

Golden snub-nosed monkey Oct. 2014 (Rrox_v1/rhiRox1) (rhiRox1, Novogene)

Track Name
Initial rhiRox1 release (using Novogene Rrox_v1 (NCBI project 266995, GCA_000769185.1): Assembly, Gap, GC Percent, INSDC, Short Match, Restr Enzymes, AUGUSTUS, Genscan Genes, Other RefSeq, CpG Islands, Human Chain/Net, Tarsier Chain/Net, RepeatMasker, Microsatellite, Interrupted Rpts, WM + SDust, Simple Repeats.

Green monkey Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) (chlSab2, Vervet Genomics Consortium GCA_000409795.2)

Track Name
Ensembl genes v86 for Green Monkey (chlSab2)

Guinea pig Feb. 2008 (Broad/cavPor3) (cavPor3, Broad Institute cavPor3)

Track Name
Rat (rn6) Chain/Nets

Opossum Oct. 2006 (Broad/monDom5) (monDom5, Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000))

Track Name
Rat (rn6) Chain/Nets

Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) (ailMel1, BGI-Shenzhen AilMel 1.0 Dec. 2009)

Track Name
Rat (rn6) Chain/Nets

Platypus Feb. 2007 (ASM227v2/ornAna2) (ornAna2, WUGSC ASM227v2)

Track Name
Rat (rn6) Chain/Nets

Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) (nasLar1, Proboscis Monkey Functional Genome Consortium)

Track Name
Initial nasLar1 release (using Proboscis Monkey Functional Genome Consortium): Assembly, Augustus, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genbank-process tracks and supporting tables, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Microsatellite, RepeatMasker, Simple Repeats, Tarsier Chain and Net, Unmasked CpG, WM + SDust, supporting tables and files.

Rabbit Apr. 2009 (Broad/oryCun2) (oryCun2, Broad Institute oryCun2 (NCBI project 12819, AAGW00000000))

Track Name
Rat (rn6) Chain/Nets

Rat Jul. 2014 (RGSC 6.0/rn6) (rn6, RGSC Rnor_6.0)

Track Name
Rat (rn6) Chain/Nets
Vertebrate 20-way Conservation

Rhesus Nov. 2015 (BCM Mmul_8.0.1/rheMac8) (rheMac8, Baylor College of Medicine Genome Sequencing Center)

Track Name
Rat (rn6) Chain/Nets

Tarsier Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) (tarSyr2, Washington University)

Track Name
Rat (rn6) Chain/Nets

Turkey Nov. 2014 (Turkey_5.0/melGal5) (melGal5, Turkey Genome Consortium)

Track Name
Rat (rn6) Chain/Nets
Initial melGal5 release (using Turkey Genome Consortium): AUGUSTUS, Assembly, Chicken Chain and Net, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genbank-process tracks and supporting tables, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Medium ground finch Chain and Net, Microsatellite, Mouse Chain and Net, Opossum Chain and Net, Peregrine falcon Chain and Net, Rat Chain and Net, RefSeq Acc, RepeatMasker, Simple Repeats, Turkey Chain/Net, Unmasked CpG, WM + SDust, X. tropicalis Chain and Net, Zebra finch Chain and Net, Zebrafish Chain and Net, supporting tables and files.

X. tropicalis Sep. 2012 (JGI 7.0/xenTro7) (xenTro7, US DOE Joint Genome Institute (JGI-PGF))

Track Name
Rat (rn6) Chain/Nets

Zebrafish Sep. 2014 (GRCz10/danRer10) (danRer10, Genome Reference Consortium Zebrafish Build 10)

Track Name
Rat (rn6) Chain/Nets