Human Gene CDK17 (uc009ztk.3)
  Description: Homo sapiens cyclin-dependent kinase 17 (CDK17), transcript variant 2, mRNA.
RefSeq Summary (NM_001170464): The protein encoded by this gene belongs to the cdc2/cdkx subfamily of the ser/thr family of protein kinases. It has similarity to a rat protein that is thought to play a role in terminally differentiated neurons. Alternatively spliced transcript variants encoding different isoforms have been found. [provided by RefSeq, Jul 2010].
Transcript (Including UTRs)
   Position: hg19 chr12:96,672,039-96,794,366 Size: 122,328 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg19 chr12:96,674,548-96,728,614 Size: 54,067 Coding Exon Count: 15 

Page IndexSequence and LinksPrimersGenetic AssociationsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:96,672,039-96,794,366)mRNA (may differ from genome)Protein (523 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCLynxMGIOMIMPubMed
TreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): CDK17
CDC HuGE Published Literature: CDK17
Positive Disease Associations: Body Weight , Fibrinogen , Parkinson Disease , Phospholipids
Related Studies:
  1. Body Weight
    Damien C Croteau-Chonka et al. Obesity (Silver Spring, Md.) 2011, Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women., Obesity (Silver Spring, Md.). [PubMed 20966902]
  2. Fibrinogen
    , , . [PubMed 0]
  3. Parkinson Disease
    , , . [PubMed 0]
           more ... click here to view the complete list

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.29 RPKM in Brain - Nucleus accumbens (basal ganglia)
Total median expression: 445.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -317.60632-0.503 Picture PostScript Text
3' UTR -624.092509-0.249 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine kinase
PF12330 - Haspin like kinase domain
PF14531 - Kinase-like

SCOP Domains:
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q00537-2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGD  WormBase 
 Protein Sequence  Protein Sequence 
 Alignment  Alignment 

-  Descriptions from all associated GenBank mRNAs
  LF208860 - JP 2014500723-A/16363: Polycomb-Associated Non-Coding RNAs.
BC033005 - Homo sapiens PCTAIRE protein kinase 2, mRNA (cDNA clone MGC:26379 IMAGE:4824359), complete cds.
X66360 - H.sapiens mRNA PCTAIRE-2 for serine/threonine protein kinase.
AK315214 - Homo sapiens cDNA, FLJ96208, highly similar to Homo sapiens PCTAIRE protein kinase 2 (PCTK2), mRNA.
AK290011 - Homo sapiens cDNA FLJ75213 complete cds.
AK294698 - Homo sapiens cDNA FLJ57365 complete cds, highly similar to Serine/threonine-protein kinase PCTAIRE-2 (EC 2.7.11.22).
MA444437 - JP 2018138019-A/16363: Polycomb-Associated Non-Coding RNAs.
AF086067 - Homo sapiens full length insert cDNA clone YZ18B05.
LF323504 - JP 2014500723-A/131007: Polycomb-Associated Non-Coding RNAs.
LF323503 - JP 2014500723-A/131006: Polycomb-Associated Non-Coding RNAs.
LF323502 - JP 2014500723-A/131005: Polycomb-Associated Non-Coding RNAs.
LF323501 - JP 2014500723-A/131004: Polycomb-Associated Non-Coding RNAs.
JD235423 - Sequence 216447 from Patent EP1572962.
JD316607 - Sequence 297631 from Patent EP1572962.
DQ890808 - Synthetic construct clone IMAGE:100003438; FLH166100.01X; RZPDo839C1186D PCTAIRE protein kinase 2 (PCTK2) gene, encodes complete protein.
KJ891762 - Synthetic construct Homo sapiens clone ccsbBroadEn_01156 CDK17 gene, encodes complete protein.
KJ905248 - Synthetic construct Homo sapiens clone ccsbBroadEn_14731 CDK17 gene, encodes complete protein.
DQ893963 - Synthetic construct Homo sapiens clone IMAGE:100008423; FLH166096.01L; RZPDo839C1185D PCTAIRE protein kinase 2 (PCTK2) gene, encodes complete protein.
LF323500 - JP 2014500723-A/131003: Polycomb-Associated Non-Coding RNAs.
LF323499 - JP 2014500723-A/131002: Polycomb-Associated Non-Coding RNAs.
LF323498 - JP 2014500723-A/131001: Polycomb-Associated Non-Coding RNAs.
LF323497 - JP 2014500723-A/131000: Polycomb-Associated Non-Coding RNAs.
LF323496 - JP 2014500723-A/130999: Polycomb-Associated Non-Coding RNAs.
LF323493 - JP 2014500723-A/130996: Polycomb-Associated Non-Coding RNAs.
LF323492 - JP 2014500723-A/130995: Polycomb-Associated Non-Coding RNAs.
LF323489 - JP 2014500723-A/130992: Polycomb-Associated Non-Coding RNAs.
CU689590 - Synthetic construct Homo sapiens gateway clone IMAGE:100020314 5' read PCTK2 mRNA.
LF323487 - JP 2014500723-A/130990: Polycomb-Associated Non-Coding RNAs.
LF323480 - JP 2014500723-A/130983: Polycomb-Associated Non-Coding RNAs.
MA559081 - JP 2018138019-A/131007: Polycomb-Associated Non-Coding RNAs.
MA559080 - JP 2018138019-A/131006: Polycomb-Associated Non-Coding RNAs.
MA559079 - JP 2018138019-A/131005: Polycomb-Associated Non-Coding RNAs.
MA559078 - JP 2018138019-A/131004: Polycomb-Associated Non-Coding RNAs.
MA559077 - JP 2018138019-A/131003: Polycomb-Associated Non-Coding RNAs.
MA559076 - JP 2018138019-A/131002: Polycomb-Associated Non-Coding RNAs.
MA559075 - JP 2018138019-A/131001: Polycomb-Associated Non-Coding RNAs.
MA559074 - JP 2018138019-A/131000: Polycomb-Associated Non-Coding RNAs.
MA559073 - JP 2018138019-A/130999: Polycomb-Associated Non-Coding RNAs.
MA559070 - JP 2018138019-A/130996: Polycomb-Associated Non-Coding RNAs.
MA559069 - JP 2018138019-A/130995: Polycomb-Associated Non-Coding RNAs.
MA559066 - JP 2018138019-A/130992: Polycomb-Associated Non-Coding RNAs.
MA559064 - JP 2018138019-A/130990: Polycomb-Associated Non-Coding RNAs.
MA559057 - JP 2018138019-A/130983: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001170464, NP_001163935, PCTK2, Q00537-2
UCSC ID: uc009ztk.3
RefSeq Accession: NM_001170464
Protein: Q00537-2, splice isoform of Q00537 CCDS: CCDS53819.1, CCDS9061.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001170464.2
exon count: 16CDS single in 3' UTR: no RNA size: 4722
ORF size: 1572CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3314.00frame shift in genome: no % Coverage: 99.81
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 2547# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.