Human Gene TEC (uc003gxz.3)
  Description: Homo sapiens tec protein tyrosine kinase (TEC), mRNA.
RefSeq Summary (NM_003215): The protein encoded by this gene belongs to the Tec family of non-receptor protein-tyrosine kinases containing a pleckstrin homology domain. Tec family kinases are involved in the intracellular signaling mechanisms of cytokine receptors, lymphocyte surface antigens, heterotrimeric G-protein coupled receptors, and integrin molecules. They are also key players in the regulation of the immune functions. Tec kinase is an integral component of T cell signaling and has a distinct role in T cell activation. This gene may be associated with myelodysplastic syndrome. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr4:48,137,800-48,271,814 Size: 134,015 Total Exon Count: 18 Strand: -
Coding Region
   Position: hg19 chr4:48,139,433-48,230,631 Size: 91,199 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:48,137,800-48,271,814)mRNA (may differ from genome)Protein (631 aa)
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TEC_HUMAN
DESCRIPTION: RecName: Full=Tyrosine-protein kinase Tec; EC=2.7.10.2;
FUNCTION: Non-receptor tyrosine kinase that contributes to signaling from many receptors and participates as a signal transducer in multiple downstream pathways, including regulation of the actin cytoskekleton. Plays a redundant role to ITK in regulation of the adaptive immune response. Regulates the development, function and differentiation of conventional T-cells and nonconventional NKT-cells. Required for TCR-dependent IL2 gene induction. Phosphorylates DOK1, one CD28-specific substrate, and contributes to CD28-signaling. Mediates signals that negatively regulate IL2RA expression induced by TCR cross-linking. Plays a redundant role to BTK in BCR-signaling for B-cell development and activation, especially by phosphorylating STAP1, a BCR-signaling protein. Required in mast cells for efficient cytokine production. Involved in both growth and differentiation mechanisms of myeloid cells through activation by the granulocyte colony-stimulating factor CSF3, a critical cytokine to promoting the growth, differentiation, and functional activation of myeloid cells. Participates in platelet signaling downstream of integrin activation. Cooperates with JAK2 through reciprocal phosphorylation to mediate cytokine-driven activation of FOS transcription. GRB10, a negative modifier of the FOS activation pathway, is another substrate of TEC. TEC is involved in G protein-coupled receptor- and integrin-mediated signalings in blood platelets. Plays a role in hepatocyte proliferation and liver regeneration and is involved in HGF-induced ERK signaling pathway. TEC regulates also FGF2 unconventional secretion (endoplasmic reticulum (ER)/Golgi-independent mechanism) under various physiological conditions through phosphorylation of FGF2 'Tyr-215'. May also be involved in the regulation of osteoclast differentiation.
CATALYTIC ACTIVITY: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.
COFACTOR: Binds 1 zinc ion per subunit (By similarity).
ENZYME REGULATION: Activated by tyrosine phosphorylation by a wide range of cytokine stimulations. When T-cells or B-cells receptors are activated, a series of phosphorylation leads to the recruitment of TEC to the cell membrane, where it is phosphorylated at Tyr-519. Also activated in response to SCF. Integrin engagement induces tyrosine phosphorylation of TEC in platelets. STAP1 participates in a positive feedback loop by increasing the activity of TEC. SOCS1 is an inhibitor of TEC kinase activity.
SUBUNIT: Interacts with INPP5D/SHIP1 and INPPL1/SHIP2. Interacts with CD28, FASLG, FGF2, GRB10, LYN and KIT. Interacts with VAV1 and JAK2 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm. Cell membrane; Peripheral membrane protein. Cytoplasm, cytoskeleton. Note=Following B-cell or T-cell receptors activation by antigen, translocates to the plasma membrane through its PH domain. Thrombin and integrin engagement induces translocation of TEC to the cytoskeleton during platelet activation. In cardiac myocytes, assumes a diffuse intracellular localization under basal conditions but is recruited to striated structures upon various stimuli, including ATP (By similarity).
TISSUE SPECIFICITY: Expressed in a wide range of cells, including hematopoietic cell lines like myeloid, B-, and T-cell lineages.
DOMAIN: The PH domain mediates the binding to inositol polyphosphate and phosphoinositides, leading to its targeting to the plasma membrane. It is extended in the BTK kinase family by a region designated the TH (Tec homology) domain, which consists of about 80 residues preceding the SH3 domain.
DOMAIN: The SH3 domain is essential for its targeting to activated CD28 costimulatory molecule (By similarity).
PTM: Following B-cell or T-cell receptors engagement, translocates to the plasma membrane where it gets phosphorylated at Tyr-519. Undergoes also tyrosine phosphorylation during platelet activation.
SIMILARITY: Belongs to the protein kinase superfamily. Tyr protein kinase family. TEC subfamily.
SIMILARITY: Contains 1 Btk-type zinc finger.
SIMILARITY: Contains 1 PH domain.
SIMILARITY: Contains 1 protein kinase domain.
SIMILARITY: Contains 1 SH2 domain.
SIMILARITY: Contains 1 SH3 domain.
CAUTION: It is uncertain whether Met-1 is the initiator.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): TEC
CDC HuGE Published Literature: TEC
Positive Disease Associations: Inflammatory Bowel Diseases
Related Studies:
  1. Inflammatory Bowel Diseases
    Richard H Duerr et al. Science (New York, N.Y.) 2006, A genome-wide association study identifies IL23R as an inflammatory bowel disease gene., Science (New York, N.Y.). [PubMed 17068223]

-  MalaCards Disease Associations
  MalaCards Gene Search: TEC
Diseases sorted by gene-association score: transient erythroblastopenia of childhood* (50)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.36 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 60.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -24.1091-0.265 Picture PostScript Text
3' UTR -550.501633-0.337 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR011993 - PH_like_dom
IPR001849 - Pleckstrin_homology
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR001245 - Ser-Thr/Tyr_kinase_cat_dom
IPR000980 - SH2
IPR001452 - SH3_domain
IPR008266 - Tyr_kinase_AS
IPR020635 - Tyr_kinase_cat_dom
IPR001562 - Znf_Btk_motif

Pfam Domains:
PF00017 - SH2 domain
PF00018 - SH3 domain
PF00069 - Protein kinase domain
PF00169 - PH domain
PF00779 - BTK motif
PF07714 - Protein tyrosine kinase
PF14604 - Variant SH3 domain

SCOP Domains:
50044 - SH3-domain
50729 - PH domain-like
56112 - Protein kinase-like (PK-like)
55550 - SH2 domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2LUL - NMR MuPIT


ModBase Predicted Comparative 3D Structure on P42680
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
 Gene Details Gene Details  
 Gene Sorter Gene Sorter  
 RGDEnsemblFlyBase  
 Protein SequenceProtein SequenceProtein Sequence  
 AlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004713 protein tyrosine kinase activity
GO:0004715 non-membrane spanning protein tyrosine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0005543 phospholipid binding
GO:0008289 lipid binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding
GO:0005102 receptor binding

Biological Process:
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0006468 protein phosphorylation
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007229 integrin-mediated signaling pathway
GO:0010543 regulation of platelet activation
GO:0016310 phosphorylation
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0019221 cytokine-mediated signaling pathway
GO:0030154 cell differentiation
GO:0035556 intracellular signal transduction
GO:0038083 peptidyl-tyrosine autophosphorylation
GO:0038095 Fc-epsilon receptor signaling pathway
GO:0042127 regulation of cell proliferation
GO:0042246 tissue regeneration
GO:0045087 innate immune response
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation
GO:0050853 B cell receptor signaling pathway

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane


-  Descriptions from all associated GenBank mRNAs
  D29767 - Homo sapiens mRNA for Tec protein-tyrosine kinase, complete cds.
BC101711 - Homo sapiens tec protein tyrosine kinase, mRNA (cDNA clone MGC:126760 IMAGE:8069217), complete cds.
BC101713 - Homo sapiens tec protein tyrosine kinase, mRNA (cDNA clone MGC:126762 IMAGE:8069219), complete cds.
BC143487 - Homo sapiens tec protein tyrosine kinase, mRNA (cDNA clone MGC:177012 IMAGE:9051995), complete cds.
JD342008 - Sequence 323032 from Patent EP1572962.
JD219867 - Sequence 200891 from Patent EP1572962.
JD113926 - Sequence 94950 from Patent EP1572962.
JD437606 - Sequence 418630 from Patent EP1572962.
JD037527 - Sequence 18551 from Patent EP1572962.
JD282694 - Sequence 263718 from Patent EP1572962.
JD160671 - Sequence 141695 from Patent EP1572962.
JD273158 - Sequence 254182 from Patent EP1572962.
JD560060 - Sequence 541084 from Patent EP1572962.
JD337186 - Sequence 318210 from Patent EP1572962.
JD118023 - Sequence 99047 from Patent EP1572962.
JD444684 - Sequence 425708 from Patent EP1572962.
JD121872 - Sequence 102896 from Patent EP1572962.
JD084760 - Sequence 65784 from Patent EP1572962.
JD527110 - Sequence 508134 from Patent EP1572962.
JD323922 - Sequence 304946 from Patent EP1572962.
JD119731 - Sequence 100755 from Patent EP1572962.
JD557095 - Sequence 538119 from Patent EP1572962.
JD403938 - Sequence 384962 from Patent EP1572962.
JD430038 - Sequence 411062 from Patent EP1572962.
JD067161 - Sequence 48185 from Patent EP1572962.
JD285758 - Sequence 266782 from Patent EP1572962.
JD047185 - Sequence 28209 from Patent EP1572962.
JD304420 - Sequence 285444 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04660 - T cell receptor signaling pathway

Reactome (by CSHL, EBI, and GO)

Protein P42680 (Reactome details) participates in the following event(s):

R-HSA-879914 IL3 stimulation induces Vav binding to Tec kinase
R-HSA-205328 Interaction of other tyrosine kinases with p-KIT
R-HSA-2730885 Recruitment of TEC kinases to p-SLP-76
R-HSA-2730833 Phosphorylation of TEC kinases by p-SYK
R-HSA-2730858 Autophosphorylation of BTK/ITK
R-HSA-2730888 Phosphorylation of PLC-gamma
R-HSA-2730847 Hydrolysis of PIP2 by PLCG
R-HSA-512988 Interleukin-3, 5 and GM-CSF signaling
R-HSA-1433557 Signaling by SCF-KIT
R-HSA-2871809 FCERI mediated Ca+2 mobilization
R-HSA-449147 Signaling by Interleukins
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-2454202 Fc epsilon receptor (FCERI) signaling
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-162582 Signal Transduction
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B7ZKZ6, NM_003215, NP_003206, P42680, PSCTK4, Q3MIS5, TEC_HUMAN
UCSC ID: uc003gxz.3
RefSeq Accession: NM_003215
Protein: P42680 (aka TEC_HUMAN)
CCDS: CCDS3481.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_003215.2
exon count: 18CDS single in 3' UTR: no RNA size: 3620
ORF size: 1896CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3989.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.