Human Gene SARAF (uc003xhs.3)
  Description: Homo sapiens transmembrane protein 66 (SARAF), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr8:29,920,631-29,940,649 Size: 20,019 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr8:29,921,404-29,940,465 Size: 19,062 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:29,920,631-29,940,649)mRNA (may differ from genome)Protein (339 aa)
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-  Comments and Description Text from UniProtKB
  ID: SARAF_HUMAN
DESCRIPTION: RecName: Full=Store-operated calcium entry-associated regulatory factor; Short=SARAF; Short=SOCE-associated regulatory factor; AltName: Full=HBV X-transactivated gene 3 protein; AltName: Full=HBV XAg-transactivated protein 3; AltName: Full=Protein FOAP-7; AltName: Full=Transmembrane protein 66; Flags: Precursor;
FUNCTION: Negative regulator of store-operated Ca(2+) entry (SOCE) involved in protecting cells from Ca(2+) overfilling. In response to cytosolic Ca(2+) elevation after endoplasmic reticulum Ca(2+) refilling, promotes a slow inactivation of STIM (STIM1 or STIM2)- dependent SOCE activity: possibly act by facilitating the deoligomerization of STIM to efficiently turn off ORAI when the endoplasmic reticulum lumen is filled with the appropriate Ca(2+) levels, and thus preventing the overload of the cell with excessive Ca(2+) ions.
SUBUNIT: Interacts with STIM1.
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass type I membrane protein. Note=Translocates to the endoplasmic reticulum-plasma membrane (ER-PM) region in a STIM1-dependent manner following cytosolic Ca(2+) elevation.
SUBCELLULAR LOCATION: Isoform 2: Endoplasmic reticulum membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Highly expressed in macrophages.
DOMAIN: The cytoplasmic C-terminal region mediates interaction with STIM1, while the N-terminal lumenal region mediates regulation of SOCE activity (PubMed:22464749).
SIMILARITY: Belongs to the SARAF family.
SEQUENCE CAUTION: Sequence=AAD44487.1; Type=Frameshift; Positions=28;

-  Primer design for this transcript
 

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Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 194.05 RPKM in Brain - Hypothalamus
Total median expression: 4996.66 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -96.20184-0.523 Picture PostScript Text
3' UTR -184.30773-0.238 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009567 - DUF1183_TMEM66

Pfam Domains:
PF06682 - SOCE-associated regulatory factor of calcium homoeostasis

ModBase Predicted Comparative 3D Structure on Q96BY9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologGenome BrowserNo ortholog
Gene Details   Gene Details 
Gene Sorter   Gene Sorter 
  Ensembl WormBase 
  Protein Sequence Protein Sequence 
  Alignment Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0006811 ion transport
GO:0006816 calcium ion transport
GO:2001256 regulation of store-operated calcium entry

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030176 integral component of endoplasmic reticulum membrane


-  Descriptions from all associated GenBank mRNAs
  BC015012 - Homo sapiens transmembrane protein 66, mRNA (cDNA clone MGC:8721 IMAGE:3908758), complete cds.
AB028926 - Homo sapiens mRNA for FOAP-7, complete cds.
AF100748 - Homo sapiens HSPC035 protein mRNA, complete cds.
AF078855 - Homo sapiens NPD003 mRNA, complete cds.
JQ348891 - Homo sapiens SARAF long isoform (TMEM66) mRNA, TMEM66-L allele, complete cds, alternatively spliced.
AK075340 - Homo sapiens cDNA PSEC0019 fis, clone NT2RP1000125, highly similar to Transmembrane protein 66 precursor.
AK025927 - Homo sapiens cDNA: FLJ22274 fis, clone HRC03616, highly similar to AF078855 Homo sapiens NPD003 mRNA.
AK130057 - Homo sapiens cDNA FLJ26547 fis, clone LNF00796.
AK094386 - Homo sapiens cDNA FLJ37067 fis, clone BRACE2015262, highly similar to Transmembrane protein 66 precursor.
AY359104 - Homo sapiens clone DNA96889 AAAC1967 (UNQ1967) mRNA, complete cds.
HM005599 - Homo sapiens clone HTL-S-59 testicular secretory protein Li 59 mRNA, complete cds.
JD432997 - Sequence 414021 from Patent EP1572962.
JD301435 - Sequence 282459 from Patent EP1572962.
JD162544 - Sequence 143568 from Patent EP1572962.
JD288211 - Sequence 269235 from Patent EP1572962.
JD027304 - Sequence 8328 from Patent EP1572962.
JD031140 - Sequence 12164 from Patent EP1572962.
JD357285 - Sequence 338309 from Patent EP1572962.
AK295360 - Homo sapiens cDNA FLJ55028 complete cds, highly similar to Transmembrane protein 66 precursor.
AK222632 - Homo sapiens mRNA for hypothetical protein MGC8721 variant, clone: CBL04189.
JD496453 - Sequence 477477 from Patent EP1572962.
AK315956 - Homo sapiens cDNA, FLJ78855 complete cds, highly similar to Transmembrane protein 66 precursor.
JD502151 - Sequence 483175 from Patent EP1572962.
JD276668 - Sequence 257692 from Patent EP1572962.
JD302442 - Sequence 283466 from Patent EP1572962.
JD061613 - Sequence 42637 from Patent EP1572962.
JD560271 - Sequence 541295 from Patent EP1572962.
AY454545 - Homo sapiens hypothetical protein MGC8721 isoform, partial sequence; alternatively spliced.
AF490252 - Homo sapiens XTP3 (XTP3) mRNA, complete cds.
JQ348892 - Homo sapiens SARAF short isoform (TMEM66) mRNA, TMEM66-S allele, complete cds, alternatively spliced.
AK314659 - Homo sapiens cDNA, FLJ95506.
KJ893968 - Synthetic construct Homo sapiens clone ccsbBroadEn_03362 TMEM66 gene, encodes complete protein.
DQ892451 - Synthetic construct clone IMAGE:100005081; FLH186449.01X; RZPDo839E0871D transmembrane protein 66 (TMEM66) gene, encodes complete protein.
DQ895663 - Synthetic construct Homo sapiens clone IMAGE:100010123; FLH186445.01L; RZPDo839E0861D transmembrane protein 66 (TMEM66) gene, encodes complete protein.
JD025478 - Sequence 6502 from Patent EP1572962.
JD027302 - Sequence 8326 from Patent EP1572962.
Z70223 - H.sapiens mRNA for 5'UTR for unknown protein (clone ICRFp507L0677).
JD021514 - Sequence 2538 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B3KQQ4, B7Z9J1, D3DSU7, H9MHJ8, H9MHJ9, HSPC035, NM_016127, NPD003, NP_057211, PSEC0019, Q53HE8, Q96BY9, Q9UNZ3, Q9Y683, SARAF_HUMAN, TMEM66, UNQ1967/PRO4499, XTP3
UCSC ID: uc003xhs.3
RefSeq Accession: NM_016127
Protein: Q96BY9 (aka SARAF_HUMAN)
CCDS: CCDS6074.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_016127.4
exon count: 6CDS single in 3' UTR: no RNA size: 1977
ORF size: 1020CDS single in intron: no Alignment % ID: 99.85
txCdsPredict score: 2240.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.