Human Gene ROGDI (ENST00000322048.12) from GENCODE V44
  Description: Homo sapiens rogdi atypical leucine zipper (ROGDI), transcript variant 1, mRNA. (from RefSeq NM_024589)
RefSeq Summary (NM_024589): This gene encodes a protein of unknown function. Loss-of-function mutation in this gene cause Kohlschutter-Tonz syndrome. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Mar 2012].
Gencode Transcript: ENST00000322048.12
Gencode Gene: ENSG00000067836.13
Transcript (Including UTRs)
   Position: hg38 chr16:4,796,968-4,802,633 Size: 5,666 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg38 chr16:4,797,460-4,802,571 Size: 5,112 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:4,796,968-4,802,633)mRNA (may differ from genome)Protein (287 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ROGDI_HUMAN
DESCRIPTION: RecName: Full=Protein rogdi homolog;
FUNCTION: May act as a positive regulator of cell proliferation (By similarity).
SUBCELLULAR LOCATION: Nucleus envelope.
TISSUE SPECIFICITY: Widely expressed with highest levels in spinal cord, brain, heart and bone marrow. Also expressed in fetal brain and liver.
DISEASE: Defects in ROGDI are the cause of Kohlschuetter-Toenz syndrome (KTZS) [MIM:226750]. An autosomal recessive disorder characterized by severe global developmental delay, early-onset intractable seizures, spasticity, and amelogenesis imperfecta affecting both primary and secondary teeth and causing yellow or brown discoloration of the teeth. Although the phenotype is consistent, there is variability. Intellectual disability is related to the severity of seizures, and the disorder can thus be considered an epileptic encephalopathy. Some infants show normal development until seizure onset, whereas others are delayed from birth. The most severely affected individuals have profound mental retardation, never acquire speech, and become bedridden early in life.
SIMILARITY: Belongs to the rogdi family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ROGDI
Diseases sorted by gene-association score: kohlschutter-tonz syndrome* (1379), complex partial epilepsy (10)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 90.46 RPKM in Brain - Cerebellum
Total median expression: 1274.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.4062-0.426 Picture PostScript Text
3' UTR -207.30492-0.421 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019386 - Rogdi_leu_zipper-containing

ModBase Predicted Comparative 3D Structure on Q9GZN7
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsemblWormBase 
Protein SequenceProtein SequenceProtein SequenceProtein SequenceProtein Sequence 
AlignmentAlignmentAlignmentAlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0007420 brain development
GO:0008284 positive regulation of cell proliferation
GO:0022008 neurogenesis
GO:0030097 hemopoiesis
GO:0042475 odontogenesis of dentin-containing tooth

Cellular Component:
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005635 nuclear envelope


-  Descriptions from all associated GenBank mRNAs
  BC012901 - Homo sapiens rogdi homolog (Drosophila), mRNA (cDNA clone MGC:9816 IMAGE:3861570), complete cds.
AL136675 - Homo sapiens mRNA; cDNA DKFZp564M1672 (from clone DKFZp564M1672).
AK026039 - Homo sapiens cDNA: FLJ22386 fis, clone HRC07619.
AK054707 - Homo sapiens cDNA FLJ30145 fis, clone BRACE2000245, highly similar to Homo sapiens leucine zipper domain protein, mRNA.
AK098348 - Homo sapiens cDNA FLJ25482 fis, clone CBL05257.
JD221579 - Sequence 202603 from Patent EP1572962.
JD197470 - Sequence 178494 from Patent EP1572962.
JD220471 - Sequence 201495 from Patent EP1572962.
JD472874 - Sequence 453898 from Patent EP1572962.
JD465221 - Sequence 446245 from Patent EP1572962.
JD048393 - Sequence 29417 from Patent EP1572962.
JD278892 - Sequence 259916 from Patent EP1572962.
JD219354 - Sequence 200378 from Patent EP1572962.
CR533547 - Homo sapiens full open reading frame cDNA clone RZPDo834E0919D for gene FLJ22386, leucine zipper domain protein; complete cds, incl. stopcodon.
JD539649 - Sequence 520673 from Patent EP1572962.
JD307446 - Sequence 288470 from Patent EP1572962.
JD188674 - Sequence 169698 from Patent EP1572962.
JD121489 - Sequence 102513 from Patent EP1572962.
JD411208 - Sequence 392232 from Patent EP1572962.
KJ899547 - Synthetic construct Homo sapiens clone ccsbBroadEn_08941 ROGDI gene, encodes complete protein.
AM393155 - Synthetic construct Homo sapiens clone IMAGE:100001884 for hypothetical protein (ROGDI gene).
AB528292 - Synthetic construct DNA, clone: pF1KE0120, Homo sapiens ROGDI gene for rogdi homolog, without stop codon, in Flexi system.
CR457355 - Homo sapiens full open reading frame cDNA clone RZPDo834H0913D for gene FLJ22386, leucine zipper domain protein; complete cds, incl. stopcodon.
CU680440 - Synthetic construct Homo sapiens gateway clone IMAGE:100018738 5' read ROGDI mRNA.
AK296334 - Homo sapiens cDNA FLJ58903 complete cds, weakly similar to Homo sapiens leucine zipper domain protein, mRNA.
JD316539 - Sequence 297563 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000322048.1, ENST00000322048.10, ENST00000322048.11, ENST00000322048.2, ENST00000322048.3, ENST00000322048.4, ENST00000322048.5, ENST00000322048.6, ENST00000322048.7, ENST00000322048.8, ENST00000322048.9, NM_024589, Q6IA00, Q9GZN7, ROGDI_HUMAN, uc002cxv.1, uc002cxv.2, uc002cxv.3, uc002cxv.4, uc002cxv.5, uc002cxv.6
UCSC ID: ENST00000322048.12
RefSeq Accession: NM_024589
Protein: Q9GZN7 (aka ROGDI_HUMAN)
CCDS: CCDS10523.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.