Human Gene CCDC102A (ENST00000258214.3) from GENCODE V44
  Description: Homo sapiens coiled-coil domain containing 102A (CCDC102A), mRNA. (from RefSeq NM_033212)
Gencode Transcript: ENST00000258214.3
Gencode Gene: ENSG00000135736.6
Transcript (Including UTRs)
   Position: hg38 chr16:57,512,181-57,536,571 Size: 24,391 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg38 chr16:57,512,741-57,529,177 Size: 16,437 Coding Exon Count: 8 

Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Methods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:57,512,181-57,536,571)mRNA (may differ from genome)Protein (550 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
PubMedUniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.57 RPKM in Artery - Aorta
Total median expression: 225.04 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -110.30219-0.504 Picture PostScript Text
3' UTR -209.50560-0.374 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q96A19
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsembl  
Protein SequenceProtein SequenceProtein SequenceProtein Sequence  
AlignmentAlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003774 motor activity

Cellular Component:
GO:0016459 myosin complex


-  Descriptions from all associated GenBank mRNAs
  BC009941 - Homo sapiens coiled-coil domain containing 102A, mRNA (cDNA clone MGC:13119 IMAGE:4100726), complete cds.
LF208239 - JP 2014500723-A/15742: Polycomb-Associated Non-Coding RNAs.
MA443816 - JP 2018138019-A/15742: Polycomb-Associated Non-Coding RNAs.
BC004307 - Homo sapiens coiled-coil domain containing 102A, mRNA (cDNA clone IMAGE:3626861), partial cds.
BC008285 - Homo sapiens coiled-coil domain containing 102A, mRNA (cDNA clone MGC:10992 IMAGE:3637387), complete cds.
JD425983 - Sequence 407007 from Patent EP1572962.
JD393388 - Sequence 374412 from Patent EP1572962.
JD483478 - Sequence 464502 from Patent EP1572962.
JD453387 - Sequence 434411 from Patent EP1572962.
JD382788 - Sequence 363812 from Patent EP1572962.
JD371430 - Sequence 352454 from Patent EP1572962.
JD097536 - Sequence 78560 from Patent EP1572962.
JD450812 - Sequence 431836 from Patent EP1572962.
JD134880 - Sequence 115904 from Patent EP1572962.
JD267888 - Sequence 248912 from Patent EP1572962.
JD503573 - Sequence 484597 from Patent EP1572962.
DQ892649 - Synthetic construct clone IMAGE:100005279; FLH188630.01X; RZPDo839E0573D coiled-coil domain containing 102A (CCDC102A) gene, encodes complete protein.
DQ895888 - Synthetic construct Homo sapiens clone IMAGE:100010348; FLH188626.01L; RZPDo839E0563D coiled-coil domain containing 102A (CCDC102A) gene, encodes complete protein.
LF373747 - JP 2014500723-A/181250: Polycomb-Associated Non-Coding RNAs.
MA609324 - JP 2018138019-A/181250: Polycomb-Associated Non-Coding RNAs.
LF373751 - JP 2014500723-A/181254: Polycomb-Associated Non-Coding RNAs.
MA609328 - JP 2018138019-A/181254: Polycomb-Associated Non-Coding RNAs.
LF373753 - JP 2014500723-A/181256: Polycomb-Associated Non-Coding RNAs.
MA609330 - JP 2018138019-A/181256: Polycomb-Associated Non-Coding RNAs.
LF373754 - JP 2014500723-A/181257: Polycomb-Associated Non-Coding RNAs.
MA609331 - JP 2018138019-A/181257: Polycomb-Associated Non-Coding RNAs.
LF373755 - JP 2014500723-A/181258: Polycomb-Associated Non-Coding RNAs.
MA609332 - JP 2018138019-A/181258: Polycomb-Associated Non-Coding RNAs.
JD128367 - Sequence 109391 from Patent EP1572962.
JD458201 - Sequence 439225 from Patent EP1572962.
JD129062 - Sequence 110086 from Patent EP1572962.
JD211597 - Sequence 192621 from Patent EP1572962.
JD192148 - Sequence 173172 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: C102A_HUMAN, ENST00000258214.1, ENST00000258214.2, NM_033212, Q96A19, Q9BT74, uc002elw.1, uc002elw.2, uc002elw.3, uc002elw.4, uc002elw.5
UCSC ID: ENST00000258214.3
RefSeq Accession: NM_033212
Protein: Q96A19 (aka C102A_HUMAN)
CCDS: CCDS10784.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.