Human Gene SRCIN1 (ENST00000617146.5) from GENCODE V44
  Description: Homo sapiens SRC kinase signaling inhibitor 1 (SRCIN1), mRNA. (from RefSeq NM_025248)
Gencode Transcript: ENST00000617146.5
Gencode Gene: ENSG00000277363.5
Transcript (Including UTRs)
   Position: hg38 chr17:38,530,031-38,605,952 Size: 75,922 Total Exon Count: 19 Strand: -
Coding Region
   Position: hg38 chr17:38,533,297-38,605,705 Size: 72,409 Coding Exon Count: 19 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:38,530,031-38,605,952)mRNA (may differ from genome)Protein (1183 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SRCN1_HUMAN
DESCRIPTION: RecName: Full=SRC kinase signaling inhibitor 1; AltName: Full=SNAP-25-interacting protein; Short=SNIP; AltName: Full=p130Cas-associated protein; AltName: Full=p140Cap;
FUNCTION: Acts as a negative regulator of SRC by activating CSK which inhibits SRC activity and downstream signaling, leading to impaired cell spreading and migration. Regulates dendritic spine morphology. Involved in calcium-dependent exocytosis. May play a role in neurotransmitter release or synapse maintenance.
SUBUNIT: Interacts with the N-terminal coiled-coil region of SNAP25 (By similarity). Interacts with BCAR1/p130Cas and SRC through its C-terminal domain. Interacts with CSK, CTTN, SORBS3/vinexin, SYP and MAPRE3/EB3.
INTERACTION: P56945:BCAR1; NbExp=3; IntAct=EBI-1393949, EBI-702093; P12931:SRC; NbExp=3; IntAct=EBI-1393949, EBI-621482;
SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, cytoskeleton. Cell projection, axon (By similarity). Cell projection, dendrite (By similarity). Cell junction, synapse (By similarity). Cell junction, synapse, postsynaptic cell membrane, postsynaptic density (By similarity). Note=Localized to the perinuclear region, lamellopodia, cortical actin and actin stress fibers but not to focal adhesions. Strongly expressed in axons and dendrites of the CA1 and CA3 hippocampal regions and of the dentate gyrus. Detected in both presynapses and postsynapses and in postsynaptic density fractions.
TISSUE SPECIFICITY: Expressed in some primary breast carcinomas where its presence is significantly associated with increased tumor size. Not detected in normal breast tissue.
PTM: Tyrosine-phosphorylated in response to EGF and to cell adhesion to integrin ligands.
SIMILARITY: Belongs to the SRCIN1 family.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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Click here to open Exonprimer with this transcript

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-  MalaCards Disease Associations
  MalaCards Gene Search: SRCIN1
Diseases sorted by gene-association score: sclerosing keratitis (17), punctate epithelial keratoconjunctivitis (17), anterior scleritis (17), deep keratitis (16), loiasis (12), superficial keratitis (12), entropion (11), scleral disease (11), parasitic helminthiasis infectious disease (9), intestinal volvulus (9), cystoisosporiasis (9), tongue disease (8), ankyloglossia (7), paraphimosis (7), intestinal schistosomiasis (7), chorioretinitis (6), elephantiasis (6), balanoposthitis (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -118.90247-0.481 Picture PostScript Text
3' UTR -1345.403266-0.412 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026727 - Srcin1

ModBase Predicted Comparative 3D Structure on Q9C0H9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0019901 protein kinase binding
GO:0019904 protein domain specific binding

Biological Process:
GO:0006887 exocytosis
GO:0030334 regulation of cell migration
GO:0034446 substrate adhesion-dependent cell spreading
GO:0050709 negative regulation of protein secretion
GO:0061001 regulation of dendritic spine morphogenesis
GO:0061098 positive regulation of protein tyrosine kinase activity
GO:0061099 negative regulation of protein tyrosine kinase activity

Cellular Component:
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0014069 postsynaptic density
GO:0015629 actin cytoskeleton
GO:0016020 membrane
GO:0030027 lamellipodium
GO:0030054 cell junction
GO:0030175 filopodium
GO:0030424 axon
GO:0030425 dendrite
GO:0042995 cell projection
GO:0043005 neuron projection
GO:0043025 neuronal cell body
GO:0045202 synapse
GO:0045211 postsynaptic membrane
GO:0005925 focal adhesion


-  Descriptions from all associated GenBank mRNAs
  AB127405 - Homo sapiens SNIP mRNA for SNAP-25-interacting protein, complete cds.
AB051471 - Homo sapiens mRNA for KIAA1684 protein, partial cds.
BC156056 - Synthetic construct Homo sapiens clone IMAGE:100062354, MGC:190479 SNAP25-interacting protein (SNIP) mRNA, encodes complete protein.
BC172455 - Synthetic construct Homo sapiens clone IMAGE:100069149, MGC:199160 SNAP25-interacting protein (SNIP) mRNA, encodes complete protein.
BC019717 - Homo sapiens cDNA clone IMAGE:4940467.
JD082116 - Sequence 63140 from Patent EP1572962.
JD321890 - Sequence 302914 from Patent EP1572962.
JD140451 - Sequence 121475 from Patent EP1572962.
JD566742 - Sequence 547766 from Patent EP1572962.
JD548982 - Sequence 530006 from Patent EP1572962.
JD233223 - Sequence 214247 from Patent EP1572962.
JD196542 - Sequence 177566 from Patent EP1572962.
JD187351 - Sequence 168375 from Patent EP1572962.
JD559082 - Sequence 540106 from Patent EP1572962.
JD454675 - Sequence 435699 from Patent EP1572962.
JD268988 - Sequence 250012 from Patent EP1572962.
JD129782 - Sequence 110806 from Patent EP1572962.
JD100201 - Sequence 81225 from Patent EP1572962.
JD131709 - Sequence 112733 from Patent EP1572962.
JD115975 - Sequence 96999 from Patent EP1572962.
JD359799 - Sequence 340823 from Patent EP1572962.
JD551404 - Sequence 532428 from Patent EP1572962.
JD215667 - Sequence 196691 from Patent EP1572962.
JD339478 - Sequence 320502 from Patent EP1572962.
JD241566 - Sequence 222590 from Patent EP1572962.
JD349238 - Sequence 330262 from Patent EP1572962.
JD182143 - Sequence 163167 from Patent EP1572962.
JD341118 - Sequence 322142 from Patent EP1572962.
JD178607 - Sequence 159631 from Patent EP1572962.
JD069418 - Sequence 50442 from Patent EP1572962.
JD409158 - Sequence 390182 from Patent EP1572962.
JD271083 - Sequence 252107 from Patent EP1572962.
JD159517 - Sequence 140541 from Patent EP1572962.
JD106353 - Sequence 87377 from Patent EP1572962.
JD085563 - Sequence 66587 from Patent EP1572962.
JD333447 - Sequence 314471 from Patent EP1572962.
JD393551 - Sequence 374575 from Patent EP1572962.
JD435756 - Sequence 416780 from Patent EP1572962.
JD408741 - Sequence 389765 from Patent EP1572962.
JD438123 - Sequence 419147 from Patent EP1572962.
JD488334 - Sequence 469358 from Patent EP1572962.
JD347176 - Sequence 328200 from Patent EP1572962.
JD396490 - Sequence 377514 from Patent EP1572962.
JD293717 - Sequence 274741 from Patent EP1572962.
JD076321 - Sequence 57345 from Patent EP1572962.
JD472077 - Sequence 453101 from Patent EP1572962.
JD398419 - Sequence 379443 from Patent EP1572962.
JD133328 - Sequence 114352 from Patent EP1572962.
JD326599 - Sequence 307623 from Patent EP1572962.
JD190060 - Sequence 171084 from Patent EP1572962.
JD110178 - Sequence 91202 from Patent EP1572962.
JD418453 - Sequence 399477 from Patent EP1572962.
JD441992 - Sequence 423016 from Patent EP1572962.
JD155687 - Sequence 136711 from Patent EP1572962.
JD281337 - Sequence 262361 from Patent EP1572962.
JD410051 - Sequence 391075 from Patent EP1572962.
JD301856 - Sequence 282880 from Patent EP1572962.
JD130337 - Sequence 111361 from Patent EP1572962.
JD233014 - Sequence 214038 from Patent EP1572962.
JD192591 - Sequence 173615 from Patent EP1572962.
JD456350 - Sequence 437374 from Patent EP1572962.
JD157083 - Sequence 138107 from Patent EP1572962.
JD255095 - Sequence 236119 from Patent EP1572962.
JD126730 - Sequence 107754 from Patent EP1572962.
JD358631 - Sequence 339655 from Patent EP1572962.
JD361707 - Sequence 342731 from Patent EP1572962.
BX648057 - Homo sapiens mRNA; cDNA DKFZp686M24203 (from clone DKFZp686M24203).
AK096097 - Homo sapiens cDNA FLJ38778 fis, clone KIDNE2019074, weakly similar to Rattus norvegicus SNIP-b mRNA.
AK126676 - Homo sapiens cDNA FLJ44721 fis, clone BRACE3022340, highly similar to p130Cas-associated protein.
AK126665 - Homo sapiens cDNA FLJ44709 fis, clone BRACE3019570, highly similar to Rattus norvegicus SNAP-25-interacting protein (SNIP).
AK295027 - Homo sapiens cDNA FLJ56434 complete cds, highly similar to p130Cas-associated protein.
BC033233 - Homo sapiens SNAP25-interacting protein, mRNA (cDNA clone IMAGE:5423326), complete cds.
JD444243 - Sequence 425267 from Patent EP1572962.
JD173567 - Sequence 154591 from Patent EP1572962.
JD458318 - Sequence 439342 from Patent EP1572962.
JD222217 - Sequence 203241 from Patent EP1572962.
JD409619 - Sequence 390643 from Patent EP1572962.
BC029278 - Homo sapiens SNAP25-interacting protein, mRNA (cDNA clone IMAGE:4932281).
JD139021 - Sequence 120045 from Patent EP1572962.
JD406570 - Sequence 387594 from Patent EP1572962.
JD240356 - Sequence 221380 from Patent EP1572962.
JD339269 - Sequence 320293 from Patent EP1572962.
JD378527 - Sequence 359551 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000617146.1, ENST00000617146.2, ENST00000617146.3, ENST00000617146.4, KIAA1684, NM_025248, P140, Q75T46, Q8N4W8, Q9C0H9, SRCN1_HUMAN, uc002hqd.1, uc002hqd.2, uc002hqd.3, uc002hqd.4, uc002hqd.5
UCSC ID: ENST00000617146.5
RefSeq Accession: NM_025248
Protein: Q9C0H9 (aka SRCN1_HUMAN)
CCDS: CCDS45660.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.