Human Gene CRYBA2 (ENST00000392096.6) from GENCODE V44
  Description: Homo sapiens crystallin beta A2 (CRYBA2), transcript variant 3, mRNA. (from RefSeq NM_057094)
RefSeq Summary (NM_057094): Crystallins are separated into two classes: taxon-specific, or enzyme, and ubiquitous. The latter class constitutes the major proteins of the vertebrate eye, which function to maintain the transparency and refractive index of the lens. Since lens central fiber cells lose their nuclei during development, these crystallins are made and then retained throughout life, making them extremely stable proteins. Mammalian lens crystallins are divided into alpha, beta, and gamma families; beta and gamma crystallins are also defined as a superfamily. Alpha and beta families are further divided into acidic and basic groups. Seven protein regions exist in crystallins: four homologous motifs, a connecting peptide, and N- and C-terminal extensions. Beta-crystallins, the most heterogeneous, differ by the presence of the C-terminal extension (present in the basic group but absent in the acidic group). Beta-crystallins form aggregates of different sizes and are able to form homodimers through self-association or heterodimers with other beta-crystallins. This gene is a beta acidic group member. Three alternatively spliced transcript variants encoding identical proteins have been reported. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000392096.6
Gencode Gene: ENSG00000163499.12
Transcript (Including UTRs)
   Position: hg38 chr2:218,990,189-218,993,421 Size: 3,233 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg38 chr2:218,990,252-218,993,176 Size: 2,925 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:218,990,189-218,993,421)mRNA (may differ from genome)Protein (197 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGIneXtProtOMIM
PubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CRBA2_HUMAN
DESCRIPTION: RecName: Full=Beta-crystallin A2; AltName: Full=Beta-A2 crystallin;
FUNCTION: Crystallins are the dominant structural components of the vertebrate eye lens.
SUBUNIT: Homo/heterodimer, or complexes of higher-order. The structure of beta-crystallin oligomers seems to be stabilized through interactions between the N-terminal arms (By similarity).
DOMAIN: Has a two-domain beta-structure, folded into four very similar Greek key motifs.
SIMILARITY: Belongs to the beta/gamma-crystallin family.
SIMILARITY: Contains 4 beta/gamma crystallin 'Greek key' domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CRYBA2
Diseases sorted by gene-association score: cataract 42* (878), cataract 24, anterior polar* (202), early-onset nuclear cataract* (94)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.89 RPKM in Pituitary
Total median expression: 21.50 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.1051-0.237 Picture PostScript Text
3' UTR -13.3063-0.211 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001064 - Beta/gamma_crystallin
IPR011024 - G_crystallin-rel

Pfam Domains:
PF00030 - Beta/Gamma crystallin

ModBase Predicted Comparative 3D Structure on P53672
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function
GO:0005212 structural constituent of eye lens
GO:0005515 protein binding
GO:0042803 protein homodimerization activity

Biological Process:
GO:0002088 lens development in camera-type eye
GO:0008150 biological_process

Cellular Component:
GO:0005575 cellular_component


-  Descriptions from all associated GenBank mRNAs
  JD489557 - Sequence 470581 from Patent EP1572962.
JD512142 - Sequence 493166 from Patent EP1572962.
AF166331 - Homo sapiens beta crystallin A2 (CRYBA2) mRNA, complete cds.
BC006285 - Homo sapiens crystallin, beta A2, mRNA (cDNA clone MGC:10315 IMAGE:3960073), complete cds.
JD323461 - Sequence 304485 from Patent EP1572962.
JD100053 - Sequence 81077 from Patent EP1572962.
JD190662 - Sequence 171686 from Patent EP1572962.
JD101274 - Sequence 82298 from Patent EP1572962.
JD493324 - Sequence 474348 from Patent EP1572962.
BT007447 - Homo sapiens crystallin, beta A2 mRNA, complete cds.

-  Other Names for This Gene
  Alternate Gene Symbols: CRBA2_HUMAN, ENST00000392096.1, ENST00000392096.2, ENST00000392096.3, ENST00000392096.4, ENST00000392096.5, NM_057094, P53672, Q4ZFX0, Q9Y562, uc002vjj.1, uc002vjj.2
UCSC ID: ENST00000392096.6
RefSeq Accession: NM_057094
Protein: P53672 (aka CRBA2_HUMAN or CRBB_HUMAN)
CCDS: CCDS2429.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.