Human Gene KCNK15 (ENST00000372861.5) from GENCODE V44
  Description: Homo sapiens potassium two pore domain channel subfamily K member 15 (KCNK15), mRNA. (from RefSeq NM_022358)
RefSeq Summary (NM_022358): This gene encodes one of the members of the superfamily of potassium channel proteins containing two pore-forming P domains. The product of this gene has not been shown to be a functional channel, however, it may require other non-pore-forming proteins for activity. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000372861.5
Gencode Gene: ENSG00000124249.7
Transcript (Including UTRs)
   Position: hg38 chr20:44,745,865-44,752,313 Size: 6,449 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg38 chr20:44,745,911-44,750,838 Size: 4,928 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:44,745,865-44,752,313)mRNA (may differ from genome)Protein (330 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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HGNCHPRDLynxMGIneXtProtOMIM
PubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KCNKF_HUMAN
DESCRIPTION: RecName: Full=Potassium channel subfamily K member 15; AltName: Full=Acid-sensitive potassium channel protein TASK-5; AltName: Full=TWIK-related acid-sensitive K(+) channel 5; AltName: Full=Two pore potassium channel KT3.3; Short=Two pore K(+) channel KT3.3;
FUNCTION: Probable potassium channel subunit. No channel activity observed in heterologous systems. May need to associate with another protein to form a functional channel.
SUBUNIT: Heterodimer (Potential).
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Detected in pancreas, heart, placenta, lung, liver, kidney, ovary, testis, skeletal muscle and adrenal gland, and at lower levels in prostate, spleen and thyroid gland.
POLYMORPHISM: Three variant polypeptides are known: TASK-5A, TASK- 5B and TASK-5C. The sequence shown is that of TASK-5C.
SIMILARITY: Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.22 RPKM in Artery - Aorta
Total median expression: 92.47 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -16.1046-0.350 Picture PostScript Text
3' UTR -561.501475-0.381 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003280 - 2pore_dom_K_chnl
IPR003092 - 2pore_dom_K_chnl_TASK
IPR022306 - 2pore_dom_K_chnl_TASK/TWIK
IPR008073 - 2pore_dom_K_chnl_TASK5
IPR013099 - Ion_trans_2

Pfam Domains:
PF07885 - Ion channel

ModBase Predicted Comparative 3D Structure on Q9H427
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005267 potassium channel activity
GO:0022841 potassium ion leak channel activity
GO:0005244 voltage-gated ion channel activity

Biological Process:
GO:0006811 ion transport
GO:0006813 potassium ion transport
GO:0030322 stabilization of membrane potential
GO:0034765 regulation of ion transmembrane transport
GO:0061337 cardiac conduction
GO:0071805 potassium ion transmembrane transport

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AF257081 - Homo sapiens two pore potassium channel KT3.3 mRNA, complete cds.
BC093874 - Homo sapiens potassium channel, subfamily K, member 15, mRNA (cDNA clone MGC:120909 IMAGE:7939719), complete cds.
BC143282 - Homo sapiens potassium channel, subfamily K, member 15, mRNA (cDNA clone MGC:176802 IMAGE:9051785), complete cds.
KJ905520 - Synthetic construct Homo sapiens clone ccsbBroadEn_15128 KCNK15 gene, encodes complete protein.
AF336342 - Homo sapiens tandem pore domain potassium channel TASK-5 mRNA, complete cds.
AF294350 - Homo sapiens clone 1 tandem acid-sensitive potassium channel TASK5 (KCNK15) mRNA, complete cds.
AF294351 - Homo sapiens clone 2 tandem acid-sensitive potassium channel TASK5 (KCNK15) mRNA, complete cds.
JD451877 - Sequence 432901 from Patent EP1572962.
JD260818 - Sequence 241842 from Patent EP1572962.
BC082981 - Homo sapiens cDNA clone IMAGE:6575075.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9H427 (Reactome details) participates in the following event(s):

R-HSA-5578910 KCNK dimers transport K+ from cytosol to extracellular region
R-HSA-5576886 Phase 4 - resting membrane potential
R-HSA-5576891 Cardiac conduction
R-HSA-397014 Muscle contraction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000372861.1, ENST00000372861.2, ENST00000372861.3, ENST00000372861.4, KCNKF_HUMAN, NM_022358, Q52LL3, Q9H427, Q9HBC8, TASK5, uc002xmr.1, uc002xmr.2, uc002xmr.3, uc002xmr.4, uc002xmr.5
UCSC ID: ENST00000372861.5
RefSeq Accession: NM_022358
Protein: Q9H427 (aka KCNKF_HUMAN or CIWF_HUMAN)
CCDS: CCDS13337.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.