Human Gene BCYRN1 (ENST00000418539.2) from GENCODE V44
  Description: Homo sapiens brain cytoplasmic RNA 1 (BCYRN1), long non-coding RNA. (from RefSeq NR_001568)
RefSeq Summary (NR_001568): This gene, which encodes a neural small non-messenger RNA, is a member of the family of interspersed repetitive DNA, and its product represents an example of a primate tissue-specific RNA polymerase III transcript. The RNA sequence is divided into three domains: a 5' portion homologous to the Alu Lm, a central adenosine-rich region, and the terminal 43-nt nonrepetitive domain. It is believed that this gene was retropositionally generated and recruited into a function regulating dendritic protein biosynthesis. At least two pseudogenes of this gene have been identified. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000418539.2
Gencode Gene: ENSG00000236824.2
Transcript (Including UTRs)
   Position: hg38 chr2:47,335,315-47,335,514 Size: 200 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksPrimersMalaCardsCTDOther Species
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:47,335,315-47,335,514)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGencodeHGNCLynxMalacards
OMIMPubMedWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BCYRN1
Diseases sorted by gene-association score: spinocerebellar ataxia, autosomal recessive 1 (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC015972 - Homo sapiens cDNA clone IMAGE:4103475, partial cds.
DI431535 - KR 1020140085815-A/13: RNA-SPECIFIC BINDING ANTIBODY AND SELECTING METHOD FOR THE SAME.
HH960910 - Sequence 1 from Patent EP1578939.
LG069246 - KR 1020150108997-A/13: RNA-SPECIFIC BINDING ANTIBODY.
U01305 - Human BC200 scRNA.
DD352856 - Molecular diagnosis and prognosis of carcinomas.
BC015988 - Homo sapiens cDNA clone IMAGE:4103145, partial cds.
JD471538 - Sequence 452562 from Patent EP1572962.
HH960911 - Sequence 2 from Patent EP1578939.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000418539.1, NR_001568, uc032nmf.1, uc032nmf.2, uc032nmf.3
UCSC ID: ENST00000418539.2
RefSeq Accession: NR_001568

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.