Mouse Gene Cep55 (ENSMUST00000169673.3) from GENCODE VM33
  Description: Mus musculus centrosomal protein 55 (Cep55), transcript variant 1, mRNA. (from RefSeq NM_001164362)
Gencode Transcript: ENSMUST00000169673.3
Gencode Gene: ENSMUSG00000024989.16
Transcript (Including UTRs)
   Position: mm39 chr19:38,043,490-38,062,869 Size: 19,380 Total Exon Count: 10 Strand: +
Coding Region
   Position: mm39 chr19:38,046,249-38,061,946 Size: 15,698 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-15 19:06:27

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:38,043,490-38,062,869)mRNA (may differ from genome)Protein (462 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: CEP55_MOUSE
DESCRIPTION: RecName: Full=Centrosomal protein of 55 kDa; Short=Cep55;
FUNCTION: Plays a role in mitotic exit and cytokinesis. Not required for microtubule nucleation. Recruits PDCD6IP and TSG101 to midbody during cytokinesis (By similarity).
SUBUNIT: Homodimer. Interacts (phosphorylated on Ser-423 and Ser- 426) with PLK1. Interacts with AKAP9; the interaction occurs in interphase and is lost upon mitotic entry. Interacts with PCNT; the interaction occurs in interphase and is lost upon mitotic entry. Interacts with PDCD6IP; the interaction is direct; CEP55 binds PDCD6IP in a 2:1 stoechiometry; PDCD6IP competes with TSG101 for the same binding site. Interacts with TSG101; TSG101 competes with PDCD6IP for the same binding site; interaction is required for cytokinesis. Interacts with FAM125A, VPS37B, VPS37C and VPS28 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome, centriole (By similarity). Cytoplasm, cytoskeleton, centrosome (By similarity). Cleavage furrow (By similarity). Midbody (By similarity). Note=Present at the centrosomes at interphase. A small portion is associated preferentially with the mother centriole, whereas the majority localizes to the pericentriolar material. During mitosis, loss of affinity for the centrosome at the onset of prophase and diffusion throughout the cell. Dissociation from the centrosome is phosphorylation-dependent. May remain localized at the centrosome during mitosis in certain cell types. Appears at the cleavage furrow in late anaphase and in the midbody in cytokinesis (By similarity).
PTM: There is a hierachy of phosphorylation, where both Ser-423 and Ser-426 are phosphorylated at the onset of mitosis, prior to Ser-434. Phosphorylation at Ser-423 and Ser-426 is required for dissociation from the centrosome at the G2/M boundary. Phosphorylation at the 3 sites, Ser-423, Ser-426 and Ser-434, is required for protein function at the final stages of cell division to complete cytokinesis successfully (By similarity).

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -191.90445-0.431 Picture PostScript Text
3' UTR -213.30923-0.231 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR022008 - EABR

Pfam Domains:
PF12180 - TSG101 and ALIX binding domain of CEP55

ModBase Predicted Comparative 3D Structure on Q8BT07
FrontTopSide
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0000281 mitotic cytokinesis
GO:0000920 cell separation after cytokinesis
GO:0007049 cell cycle
GO:0014066 regulation of phosphatidylinositol 3-kinase signaling
GO:0045184 establishment of protein localization
GO:0051301 cell division
GO:0072001 renal system development
GO:1904888 cranial skeletal system development

Cellular Component:
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005814 centriole
GO:0005815 microtubule organizing center
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0030496 midbody
GO:0032154 cleavage furrow
GO:0045171 intercellular bridge
GO:0090543 Flemming body


-  Descriptions from all associated GenBank mRNAs
  AK012311 - Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700032M20 product:hypothetical protein, full insert sequence.
AK088548 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430020A07 product:hypothetical protein, full insert sequence.
AK028216 - Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810013H18 product:RIKEN cDNA 1200008O12 gene, full insert sequence.
AK004655 - Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200008O12 product:hypothetical protein, full insert sequence.
AK041399 - Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630007B15 product:unclassifiable, full insert sequence.
BC031396 - Mus musculus centrosomal protein 55, mRNA (cDNA clone MGC:37048 IMAGE:4950530), complete cds.
BC026966 - Mus musculus centrosomal protein 55, mRNA (cDNA clone IMAGE:4017780), partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: CEP55_MOUSE, ENSMUST00000169673.1, ENSMUST00000169673.2, NM_001164362, Q8BT07, Q8C2J0, Q8K2I8, Q8R2Y4, Q9DBZ8, uc008hjb.1, uc008hjb.2, uc008hjb.3, uc008hjb.4
UCSC ID: ENSMUST00000169673.3
RefSeq Accession: NM_001164362
Protein: Q8BT07 (aka CEP55_MOUSE)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.