Mouse Gene Ntsr1 (ENSMUST00000170448.2) from GENCODE VM33
  Description: Receptor for the tridecapeptide neurotensin. It is associated with G proteins that activate a phosphatidylinositol- calcium second messenger system. (from UniProt O88319)
Gencode Transcript: ENSMUST00000170448.2
Gencode Gene: ENSMUSG00000027568.10
Transcript (Including UTRs)
   Position: mm39 chr2:180,142,020-180,186,012 Size: 43,993 Total Exon Count: 5 Strand: +
Coding Region
   Position: mm39 chr2:180,142,211-180,184,573 Size: 42,363 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Methods
Data last updated at UCSC: 2023-08-15 19:06:27

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:180,142,020-180,186,012)mRNA (may differ from genome)Protein (424 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsMGIPubMed
ReactomeSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: NTR1_MOUSE
DESCRIPTION: RecName: Full=Neurotensin receptor type 1; Short=NT-R-1; Short=NTR1;
FUNCTION: Receptor for the tridecapeptide neurotensin. It is associated with G proteins that activate a phosphatidylinositol- calcium second messenger system.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family. Neurotensin receptor subfamily. NTSR1 sub-subfamily.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -63.40191-0.332 Picture PostScript Text
3' UTR -426.801128-0.378 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam
IPR003985 - NT1_rcpt
IPR003984 - NT_rcpt

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

ModBase Predicted Comparative 3D Structure on O88319
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0008188 neuropeptide receptor activity
GO:0016492 G-protein coupled neurotensin receptor activity
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0046982 protein heterodimerization activity
GO:0047485 protein N-terminus binding

Biological Process:
GO:0001659 temperature homeostasis
GO:0003085 negative regulation of systemic arterial blood pressure
GO:0003254 regulation of membrane depolarization
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007218 neuropeptide signaling pathway
GO:0007612 learning
GO:0008344 adult locomotory behavior
GO:0014049 positive regulation of glutamate secretion
GO:0014054 positive regulation of gamma-aminobutyric acid secretion
GO:0033993 response to lipid
GO:0043065 positive regulation of apoptotic process
GO:0043066 negative regulation of apoptotic process
GO:0043576 regulation of respiratory gaseous exchange
GO:0050965 detection of temperature stimulus involved in sensory perception of pain
GO:0051280 negative regulation of release of sequestered calcium ion into cytosol
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol
GO:0051930 regulation of sensory perception of pain
GO:0060732 positive regulation of inositol phosphate biosynthetic process
GO:0070779 D-aspartate import
GO:0071545 inositol phosphate catabolic process
GO:0090238 positive regulation of arachidonic acid secretion
GO:0097151 positive regulation of inhibitory postsynaptic potential
GO:0098712 L-glutamate import across plasma membrane
GO:0098900 regulation of action potential
GO:2001259 positive regulation of cation channel activity

Cellular Component:
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005783 endoplasmic reticulum
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009898 cytoplasmic side of plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030424 axon
GO:0030425 dendrite
GO:0032280 symmetric synapse
GO:0043025 neuronal cell body
GO:0043195 terminal bouton
GO:0043197 dendritic spine
GO:0043198 dendritic shaft
GO:0043204 perikaryon
GO:0043679 axon terminus
GO:0044309 neuron spine
GO:0045121 membrane raft
GO:0045202 synapse


-  Descriptions from all associated GenBank mRNAs
  AB017027 - Mus musculus mRNA for neurotensin receptor type 1, complete cds.
BC087730 - Mus musculus cDNA clone IMAGE:30535795, containing frame-shift errors.
BC138630 - Mus musculus neurotensin receptor 1, mRNA (cDNA clone MGC:170255 IMAGE:8861650), complete cds.
BC138633 - Mus musculus neurotensin receptor 1, mRNA (cDNA clone MGC:170258 IMAGE:8861653), complete cds.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O88319 (Reactome details) participates in the following event(s):

R-MMU-388900 Neurotensin receptors can bind neurotensins
R-MMU-749452 The Ligand:GPCR:Gq complex dissociates
R-MMU-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-MMU-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-MMU-375276 Peptide ligand-binding receptors
R-MMU-416476 G alpha (q) signalling events
R-MMU-373076 Class A/1 (Rhodopsin-like receptors)
R-MMU-388396 GPCR downstream signalling
R-MMU-500792 GPCR ligand binding
R-MMU-372790 Signaling by GPCR
R-MMU-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: BC138630, ENSMUST00000170448.1, NTR1_MOUSE, Ntsr, O88319, uc012cmd.1, uc012cmd.2, uc012cmd.3
UCSC ID: ENSMUST00000170448.2
RefSeq Accession: NM_018766
Protein: O88319 (aka NTR1_MOUSE)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.