Sample Summary skeletal_muscle_satellite_cell Summary Track Settings
 
Roadmap Epigenome skeletal_muscle_satellite_cell Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
     ENCFF008TEH_H3K4me1  ENCFF008TEH H3K4me1    Data format 
     ENCFF038RUV_H3K4me2  ENCFF038RUV H3K4me2    Data format 
     ENCFF039UIX_H3K27me3  ENCFF039UIX H3K27me3    Data format 
     ENCFF064PNQ_H3K4me1  ENCFF064PNQ H3K4me1    Data format 
     ENCFF064TWM_H3K9me3  ENCFF064TWM H3K9me3    Data format 
     ENCFF085KDJ_H3K4me1  ENCFF085KDJ H3K4me1    Data format 
     ENCFF103SVV_H3K27me3  ENCFF103SVV H3K27me3    Data format 
     ENCFF123LKT_H3K9ac  ENCFF123LKT H3K9ac    Data format 
     ENCFF137XPG_H3K4me3  ENCFF137XPG H3K4me3    Data format 
     ENCFF142KVK_H3K4me1  ENCFF142KVK H3K4me1    Data format 
     ENCFF162HGN_H3K4me2  ENCFF162HGN H3K4me2    Data format 
     ENCFF166XCD_H3K4me2  ENCFF166XCD H3K4me2    Data format 
     ENCFF190BUU_H3K36me3  ENCFF190BUU H3K36me3    Data format 
     ENCFF197WCC_H3K9ac  ENCFF197WCC H3K9ac    Data format 
     ENCFF202DBT_H3K9me3  ENCFF202DBT H3K9me3    Data format 
     ENCFF203SHR_H3K4me2  ENCFF203SHR H3K4me2    Data format 
     ENCFF213QTC_H3K9ac  ENCFF213QTC H3K9ac    Data format 
     ENCFF214BOB_H3K27me3  ENCFF214BOB H3K27me3    Data format 
     ENCFF215ORJ_H3K27me3  ENCFF215ORJ H3K27me3    Data format 
     ENCFF223QWQ_H3K27me3  ENCFF223QWQ H3K27me3    Data format 
     ENCFF235DOM_H3K9me3  ENCFF235DOM H3K9me3    Data format 
     ENCFF235MYZ_H3K36me3  ENCFF235MYZ H3K36me3    Data format 
     ENCFF258FIM_H3K9ac  ENCFF258FIM H3K9ac    Data format 
     ENCFF271HNC_H3K4me3  ENCFF271HNC H3K4me3    Data format 
     ENCFF282RME_H3K4me2  ENCFF282RME H3K4me2    Data format 
     ENCFF292CHU_H3K4me2  ENCFF292CHU H3K4me2    Data format 
     ENCFF292QSV_H3K9ac  ENCFF292QSV H3K9ac    Data format 
     ENCFF326CLN_H3K4me3  ENCFF326CLN H3K4me3    Data format 
     ENCFF335FPN_H3K27me3  ENCFF335FPN H3K27me3    Data format 
     ENCFF341KGN_H3K4me3  ENCFF341KGN H3K4me3    Data format 
     ENCFF356AYS_H3K4me3  ENCFF356AYS H3K4me3    Data format 
     ENCFF365LDJ_H3K27me3  ENCFF365LDJ H3K27me3    Data format 
     ENCFF417EQT_H3K9me3  ENCFF417EQT H3K9me3    Data format 
     ENCFF420ROI_H3K36me3  ENCFF420ROI H3K36me3    Data format 
     ENCFF428MQX_H3K9ac  ENCFF428MQX H3K9ac    Data format 
     ENCFF443IIA_H3K9me3  ENCFF443IIA H3K9me3    Data format 
     ENCFF447BFP_H3K4me3  ENCFF447BFP H3K4me3    Data format 
     ENCFF461XFD_H3K27me3  ENCFF461XFD H3K27me3    Data format 
     ENCFF468YKQ_H3K36me3  ENCFF468YKQ H3K36me3    Data format 
     ENCFF473FZJ_H3K36me3  ENCFF473FZJ H3K36me3    Data format 
     ENCFF476CNA_H3K36me3  ENCFF476CNA H3K36me3    Data format 
     ENCFF495PGR_H3K4me2  ENCFF495PGR H3K4me2    Data format 
     ENCFF503IEK_H3K4me2  ENCFF503IEK H3K4me2    Data format 
     ENCFF503YBN_H3K4me2  ENCFF503YBN H3K4me2    Data format 
     ENCFF510CBW_H3K4me1  ENCFF510CBW H3K4me1    Data format 
     ENCFF511HJD_H3K4me1  ENCFF511HJD H3K4me1    Data format 
     ENCFF527NNK_H3K27me3  ENCFF527NNK H3K27me3    Data format 
     ENCFF557EWP_H3K36me3  ENCFF557EWP H3K36me3    Data format 
     ENCFF562DPH_H3K4me3  ENCFF562DPH H3K4me3    Data format 
     ENCFF580ZXA_H3K9me3  ENCFF580ZXA H3K9me3    Data format 
     ENCFF596AMA_H3K4me2  ENCFF596AMA H3K4me2    Data format 
     ENCFF608ZHK_H3K9ac  ENCFF608ZHK H3K9ac    Data format 
     ENCFF617HJX_H3K4me3  ENCFF617HJX H3K4me3    Data format 
     ENCFF629DOD_H3K9ac  ENCFF629DOD H3K9ac    Data format 
     ENCFF633USD_H3K4me1  ENCFF633USD H3K4me1    Data format 
     ENCFF641VWF_H3K36me3  ENCFF641VWF H3K36me3    Data format 
     ENCFF688VLA_H3K9me3  ENCFF688VLA H3K9me3    Data format 
     ENCFF697PFU_H3K4me3  ENCFF697PFU H3K4me3    Data format 
     ENCFF721BQF_H3K4me1  ENCFF721BQF H3K4me1    Data format 
     ENCFF725RDE_H3K4me1  ENCFF725RDE H3K4me1    Data format 
     ENCFF736IWL_H3K9ac  ENCFF736IWL H3K9ac    Data format 
     ENCFF748SEV_H3K9me3  ENCFF748SEV H3K9me3    Data format 
     ENCFF769YYE_H3K4me1  ENCFF769YYE H3K4me1    Data format 
     ENCFF776DQI_H3K36me3  ENCFF776DQI H3K36me3    Data format 
     ENCFF776NCG_H3K9me3  ENCFF776NCG H3K9me3    Data format 
     ENCFF784TTK_H3K36me3  ENCFF784TTK H3K36me3    Data format 
     ENCFF789AGD_H3K4me3  ENCFF789AGD H3K4me3    Data format 
     ENCFF803OHB_H3K9me3  ENCFF803OHB H3K9me3    Data format 
     ENCFF813CYK_H3K4me1  ENCFF813CYK H3K4me1    Data format 
     ENCFF818YRW_H3K27me3  ENCFF818YRW H3K27me3    Data format 
     ENCFF823ZDZ_H3K36me3  ENCFF823ZDZ H3K36me3    Data format 
     ENCFF866QOG_H3K4me2  ENCFF866QOG H3K4me2    Data format 
     ENCFF869XXV_H3K9me3  ENCFF869XXV H3K9me3    Data format 
     ENCFF873AJM_H3K4me2  ENCFF873AJM H3K4me2    Data format 
     ENCFF897BGP_H3K4me3  ENCFF897BGP H3K4me3    Data format 
     ENCFF907XWF_H3K9ac  ENCFF907XWF H3K9ac    Data format 
     ENCFF911ZOQ_H3K4me1  ENCFF911ZOQ H3K4me1    Data format 
     ENCFF912JRM_H3K36me3  ENCFF912JRM H3K36me3    Data format 
     ENCFF939IDL_H3K27me3  ENCFF939IDL H3K27me3    Data format 
     ENCFF952QXG_H3K9ac  ENCFF952QXG H3K9ac    Data format 
     ENCFF957KOP_H3K9ac  ENCFF957KOP H3K9ac    Data format 
     ENCFF978KCT_H3K27me3  ENCFF978KCT H3K27me3    Data format 
     ENCFF981RTA_H3K4me3  ENCFF981RTA H3K4me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:sigmoid_colon
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF